Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57180 650 / 0 BPG2 BRASSINAZOLE\(BRZ\) INSENSITIVE PALE GREEN 2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G10620 405 / 8e-134 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G47450 102 / 1e-22 RIF1, ATNOA1, ATNOS1, NOS1 RESISTANT TO INHIBITION WITH FOSMIDOMYCIN 1, NITRIC OXIDE SYNTHASE 1, NO ASSOCIATED 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031030 [exp] 1038 / 0 AT3G57180 731 / 0.0 BRASSINAZOLE\(BRZ\) INSENSITIVE PALE GREEN 2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035986 [exp] 405 / 2e-133 AT4G10620 694 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016692 [exp] 312 / 6e-100 AT4G10620 501 / 1e-174 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000122 [exp] 231 / 6e-71 AT4G10620 346 / 9e-117 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031160 [exp] 105 / 1e-23 AT3G47450 719 / 0.0 RESISTANT TO INHIBITION WITH FOSMIDOMYCIN 1, NITRIC OXIDE SYNTHASE 1, NO ASSOCIATED 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10031736 [exp] 82 / 5e-16 AT3G47450 622 / 0.0 RESISTANT TO INHIBITION WITH FOSMIDOMYCIN 1, NITRIC OXIDE SYNTHASE 1, NO ASSOCIATED 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G044700 [exp] 705 / 0 AT3G57180 750 / 0.0 BRASSINAZOLE\(BRZ\) INSENSITIVE PALE GREEN 2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G010400 [exp] 389 / 2e-127 AT4G10620 695 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G124900 [exp] 107 / 3e-24 AT3G47450 727 / 0.0 RESISTANT TO INHIBITION WITH FOSMIDOMYCIN 1, NITRIC OXIDE SYNTHASE 1, NO ASSOCIATED 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01926 [flax] [poplar] MMR_HSR1 50S ribosome-binding GTPase
Representative CDS sequence Show only first row Show all	>Lus10035420 pacid=23170462 polypeptide=Lus10035420 locus=Lus10035420.g ID=Lus10035420.BGIv1.0 annot-version=v1.0 ATGCACGTCTTACTTTCCACGTCAGCATCCAAGTTCACCAGCTCTAAACTTCTCTACTGGAATCCTTATCCTCAGCAAGTTCCCTCATCCAAAAATTGCC TTTCTCCAGGTTCAGGTTTGAGAGTAGAGAGGAAGAAATGTGAGAGGACAAGTTTTTCATTAGTAGCCAAAGCCGGAAGCGTTGGTGGTAAGATTGGGGC TAGGAAAGGAATTAGGGATTTAATCTTGAGCGAGGGAAGGGACGAGGATGAGAAGCATGGAGCAATTTGTCCTGGATGTGGGGTGTTTATGCAGGATAGA GAGCAAAACCTTCCTGGCTACTTTCAACCTAGGAGACTGAGTGTTGAGATAGAGGAAGGTTTGGATGGTGAAGATGATGAGGTGGAAGTGTTTGATTGGG AAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGAAGGAGAAGAGTTGGTTGGCGAGGTTGGAGACGAATTCAAGCAATCGAAGGAGATTGAAGGAGTGAA ATGGGATTATGATGAGATTGAAGCATTGTTGAACGATAAAGAGGATGACTTGGATTTGGATGGTTTTACTCTACCGGGTGTTGGGTACGGGAACATCACG GAGGAGGTTATGGAGAAAGAAATGAGGAGGAGGGAGGAGAGGAAGGTGTCGAAAGCAGAGAGGAAAAGGGTGGCTAGGGAGGCTCGAAAGGAGCAGAAAG ACAACGAGGTTACAGTATGTGCTAGGTGCCACTCTTTGCGGAATTATGGCCAGGTTAAGAACCAGTCAGCAGAGAATTTAATACCTGATTTCGACTTCAA CAGGTTGATTTCGACTAGGTTGATAAAGCCAGTAGGGAATGCTAATGCGAGTGTTGTCATCATGGTTGTCGATTGTGTCGACTTCGATGGCTCGTTCCCG AAACGGGCAGCTAAGTCGTTGTTTGAGGCATTGGAAGGTGTCAAAGCAGCTGACCTTAAATCTAGCAAAAAGATGCCTAAGCTTGTTCTTGTTGCGACAA AGGTTGATCTCCTCCCATCGCAAATATCCCCCGCTAGGTTAGACAGATGGATAAGGCATCGTGCTAGGGCAGCAGGGGCACCTAAGTTGGCTGGCGTCTA TCTGGTTAGCTCGCGTAAGGATTTGGGTGTGAAGAACTTGTTGTCATTTGTAAAGGAGTTGGCTGGTCCTCGAGGGAATGTATGGGTTATTGGAGCTCAG AATGCTGGTAAATCCACACTGATCAATGCACTTGCGAAGAAAGAAGGCGCCAAAGTTACGAAGCTCACGGAGGCTCCGGTTCCTGGTACCACTCTTGGGA TCTTGAGAATAGGGGGTATTTTGTCTGCCAAAGCAAAGATGTACGATACTCCGGGACTTCTACATCCAAATCTTTTGTCAATGAGGTTGAACAGGGATGA ACAGAAAATGGTTGAGATACGCAAGGAGTTGAAACCTCGATCGTATAGGGTGAAAACTGGTACTGCAATTCACCTCGGAGGACTGGCGAGACTGGACCTT ATTCAAGCTTCTGTAGAGACAATTTATATCACAGTTTGGGCATCCCCGAGCATTTCTCTCCACATGGGAAAGTTAGAAACTGCCGACGAATTCTACAATA ACCATGTTGGTCTTCGGTTGCAGCCCCCAGTGGGGAGAGAACGAGCCGACGAGCTGGGGGAATGGGTAGCGAGAGAAATCAAGGTGACCGGAAGCAGCTG GGACGTGAACAGCATTGACATCTCGATAGCTGGGTTGGGTTGGTTTTCAGTGGGTCTGAAAGGCGAAGCGACGCTGACTTTAAGAACGTACGACTCTGTC GAAATCACGCTTAGAGATCCACTGGTTCTGGACCGAGCAACGTTCCTGGAGAGGCCCGGTTTCTGGCTACCGCAGGCTCTATCTGACGCACTTGGCAACG AGAAGAAGCGAGAAGCTAAGAAGAAGAAGAAACAGGCTGAAGATTACGAGGAAAGTCTCGAACTTTACTCGGAGGTGGCTGCTTGA
AA sequence Show only first row Show all	>Lus10035420 pacid=23170462 polypeptide=Lus10035420 locus=Lus10035420.g ID=Lus10035420.BGIv1.0 annot-version=v1.0 MHVLLSTSASKFTSSKLLYWNPYPQQVPSSKNCLSPGSGLRVERKKCERTSFSLVAKAGSVGGKIGARKGIRDLILSEGRDEDEKHGAICPGCGVFMQDR EQNLPGYFQPRRLSVEIEEGLDGEDDEVEVFDWEEEEEEEEEEEEGEELVGEVGDEFKQSKEIEGVKWDYDEIEALLNDKEDDLDLDGFTLPGVGYGNIT EEVMEKEMRRREERKVSKAERKRVAREARKEQKDNEVTVCARCHSLRNYGQVKNQSAENLIPDFDFNRLISTRLIKPVGNANASVVIMVVDCVDFDGSFP KRAAKSLFEALEGVKAADLKSSKKMPKLVLVATKVDLLPSQISPARLDRWIRHRARAAGAPKLAGVYLVSSRKDLGVKNLLSFVKELAGPRGNVWVIGAQ NAGKSTLINALAKKEGAKVTKLTEAPVPGTTLGILRIGGILSAKAKMYDTPGLLHPNLLSMRLNRDEQKMVEIRKELKPRSYRVKTGTAIHLGGLARLDL IQASVETIYITVWASPSISLHMGKLETADEFYNNHVGLRLQPPVGRERADELGEWVAREIKVTGSSWDVNSIDISIAGLGWFSVGLKGEATLTLRTYDSV EITLRDPLVLDRATFLERPGFWLPQALSDALGNEKKREAKKKKKQAEDYEESLELYSEVAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57180		BPG2	BRASSINAZOLE\(BRZ\) INSENSITIV...		Lus10035420 [exp]	0	1
AT5G36170		ATPRFB, HCF109	high chlorophyll fluorescent 1...		Lus10036446 [exp]	2.8	0.8898
AT5G66055		EMB16, EMB2036,...	EMBRYO DEFECTIVE 2036, EMBRYO ...		Lus10028399 [exp]	6.1	0.8968
AT1G70070		ISE2, EMB25, PD...	PIGMENT DEFECTIVE 317, INCREAS...		Lus10013294 [exp]	8.8	0.8889
AT5G17790		VAR3	VARIEGATED 3, zinc finger (Ran...		Lus10003872 [exp]	9.7	0.8603
AT1G21600		PTAC6	plastid transcriptionally acti...		Lus10028562 [exp]	13.4	0.8791
AT1G66670		NCLPP3, NCLPP4,...	CLP protease proteolytic subun...		Lus10000449 [exp]	14.1	0.8777
AT4G29750			CRS1 / YhbY (CRM) domain-conta...		Lus10027610 [exp]	16.0	0.8809
AT1G74970		TWN3, RPS9	ribosomal protein S9 (.1)		Lus10016295 [exp]	22.5	0.8683
AT3G06980			DEA(D/H)-box RNA helicase fami...		Lus10038771 [exp]	23.0	0.8702
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10043197 [exp]	28.2	0.8300

Compare expression of checked genes

Lus10035420 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.