Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04010 57 / 3e-09 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031031 [exp] 345 / 2e-120 AT5G04010 106 / 4e-27 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G044801 [exp] 106 / 2e-27 AT5G04010 114 / 8e-30 F-box family protein (.1) Potri.004G076800 [exp] 89 / 9e-21 AT5G04010 122 / 9e-33 F-box family protein (.1) Potri.004G077301 [exp] 79 / 2e-17 AT5G04010 54 / 9e-09 F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035421 pacid=23170587 polypeptide=Lus10035421 locus=Lus10035421.g ID=Lus10035421.BGIv1.0 annot-version=v1.0 ATGCCAACACATGAACATCATGATCAAAACTTACACCACACGCCCCCGCCATGGGAGGTGCAAACCCTACTCCAACAACGTCGACGACGAAACACTAGCC ACCGCCGCCTGTGTATCAAAATCCTGGAGAGACGCCACGTCATCCGACCACATCTGGCAAAAACTCGCAAGCTCCGACTTCCCTTCCTTAACCTCCACTC TCAAGACATTCGTCCAACCTTCCCTGCCTTACCGCCGCATATACGCCCTACCCCACTCCGCCGCCTCATGATGAAACCCGAATACTCCCCCCATAAACCT TCACTCTCCCTCCACCGCCTCATCTTCGCATTCGACATCCAAACCAGGTTCCGCCGCGTTTCCTTCTCCACTCCTGCGGAGGATGTGGCTGTATTTGACT CCAATGGCGTGTTCCGGTTTGACGTTGCCGTTGACCTCCTCGTGGGGGAGGAGGTGAGGATGACGTGGCATGCGGTGGTGAGGGACGACGACGAGAGGAA GGCACAGGCGGTGCTGCCGTCGGTGTTGACTTTGATGGATAGTAGTGTTGTGAAGGTGAGGAAGGAGGCGGGTGGGGAGGTGGTTGGGTGGTTGTCGGAG GAGCTTCCGCAGCCGCCGGGGTGTTGTTGCTGCTATCGGAATGAGGAGTCGGGGTTGAGTCGGATGGTGGCGGATTTGAAGATGGGATTTTGTGGTGGGG AAGAGAGGATGAGGGTTGAGAAGGTGAGTTTGGGGTTGTTGAGTACTGAAAAATGGAGGTACGTTAGCGTGGACGATGGGCTTAGGTACTTGCAGCACTT TCTCTTGGACAAGTGA
AA sequence Show only first row Show all	>Lus10035421 pacid=23170587 polypeptide=Lus10035421 locus=Lus10035421.g ID=Lus10035421.BGIv1.0 annot-version=v1.0 MPTHEHHDQNLHHTPPPWEVQTLLQQRRRRNTSHRRLCIKILERRHVIRPHLAKTRKLRLPFLNLHSQDIRPTFPALPPHIRPTPLRRLMMKPEYSPHKP SLSLHRLIFAFDIQTRFRRVSFSTPAEDVAVFDSNGVFRFDVAVDLLVGEEVRMTWHAVVRDDDERKAQAVLPSVLTLMDSSVVKVRKEAGGEVVGWLSE ELPQPPGCCCCYRNEESGLSRMVADLKMGFCGGEERMRVEKVSLGLLSTEKWRYVSVDDGLRYLQHFLLDK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04010			F-box family protein (.1)		Lus10035421 [exp]	0	1
AT2G35930		PUB23	plant U-box 23 (.1)		Lus10021267 [exp]	1.0	0.9767
AT3G21550		AtDMP2	Arabidopsis thaliana DUF679 do...		Lus10041247 [exp]	2.8	0.9750
AT3G21550		AtDMP2	Arabidopsis thaliana DUF679 do...		Lus10021955 [exp]	4.9	0.9666
AT4G32810		MAX4, CCD8, ATC...	MORE AXILLARY BRANCHING 4, car...		Lus10001599 [exp]	6.3	0.9577
AT1G33800			Protein of unknown function (D...		Lus10034373 [exp]	6.5	0.9577
AT3G59530		LAP3	LESS ADHERENT POLLEN 3, Calciu...		Lus10019377 [exp]	7.1	0.9548
					Lus10006423 [exp]	8.9	0.9614
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008938 [exp]	9.5	0.9604
AT4G32810		MAX4, CCD8, ATC...	MORE AXILLARY BRANCHING 4, car...		Lus10038721 [exp]	9.8	0.9517
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Lus10013932 [exp]	13.7	0.9556

Compare expression of checked genes

Lus10035421 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.