Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50010 849 / 0 TUA2 tubulin alpha-2 chain (.1) AT1G04820 849 / 0 TOR2, TUA4 TORTIFOLIA 2, tubulin alpha-4 chain (.1) AT4G14960 848 / 0 TUA6 Tubulin/FtsZ family protein (.1.2) AT5G19780 821 / 0 TUA5 tubulin alpha-5 (.1) AT5G19770 821 / 0 TUA3 tubulin alpha-3 (.1) AT1G64740 796 / 0 TUA1 alpha-1 tubulin (.1) AT1G75780 365 / 6e-123 TUB1 tubulin beta-1 chain (.1) AT5G12250 362 / 9e-122 TUB6 beta-6 tubulin (.1) AT5G62690 362 / 1e-121 TUB2 tubulin beta chain 2 (.1) AT5G62700 362 / 1e-121 atgcp3, TUB3 tubulin beta chain 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031032 [exp] 865 / 0 AT1G50010 910 / 0.0 tubulin alpha-2 chain (.1) Lus10013765 [exp] 821 / 0 AT5G19770 914 / 0.0 tubulin alpha-3 (.1) Lus10039169 [exp] 821 / 0 AT5G19780 914 / 0.0 tubulin alpha-5 (.1) Lus10020281 [exp] 813 / 0 AT5G19780 850 / 0.0 tubulin alpha-5 (.1) Lus10005705 [exp] 813 / 0 AT5G19780 850 / 0.0 tubulin alpha-5 (.1) Lus10002000 [exp] 363 / 3e-122 AT5G62690 824 / 0.0 tubulin beta chain 2 (.1) Lus10035497 [exp] 363 / 3e-122 AT5G62690 824 / 0.0 tubulin beta chain 2 (.1) Lus10008528 [exp] 361 / 2e-121 AT5G12250 837 / 0.0 beta-6 tubulin (.1) Lus10036069 [exp] 361 / 2e-121 AT5G12250 914 / 0.0 beta-6 tubulin (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G111900 [exp] 857 / 0 AT1G50010 858 / 0.0 tubulin alpha-2 chain (.1) Potri.009G085100 [exp] 854 / 0 AT1G50010 852 / 0.0 tubulin alpha-2 chain (.1) Potri.001G289500 [exp] 852 / 0 AT4G14960 855 / 0.0 Tubulin/FtsZ family protein (.1.2) Potri.017G081000 [exp] 850 / 0 AT4G14960 852 / 0.0 Tubulin/FtsZ family protein (.1.2) Potri.003G220300 [exp] 816 / 0 AT5G19780 813 / 0.0 tubulin alpha-5 (.1) Potri.001G004600 [exp] 811 / 0 AT5G19780 809 / 0.0 tubulin alpha-5 (.1) Potri.019G036000 [exp] 808 / 0 AT5G19780 813 / 0.0 tubulin alpha-5 (.1) Potri.013G056800 [exp] 806 / 0 AT5G19780 811 / 0.0 tubulin alpha-5 (.1) Potri.006G095000 [exp] 363 / 2e-122 AT5G23860 852 / 0.0 tubulin beta 8 (.1.2) Potri.001G272800 [exp] 363 / 3e-122 AT5G62700 857 / 0.0 tubulin beta chain 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0442 [flax] [poplar] Tubulin_C PF03953 [flax] [poplar] Tubulin_C Tubulin C-terminal domain CL0566 [flax] [poplar] Tubulin PF00091 [flax] [poplar] Tubulin Tubulin/FtsZ family, GTPase domain
Representative CDS sequence Show only first row Show all	>Lus10035422 pacid=23170476 polypeptide=Lus10035422 locus=Lus10035422.g ID=Lus10035422.BGIv1.0 annot-version=v1.0 ATGAGAGAATGCATCTCCATCCACATCGGTCAGGCCGGTATCCAGGTCGGAAACGCCTGTTGGGAGCTTTACTGCCTCGAGCATGGAATTCAGCCTGATG GCCAGATGCCGAGTGACAAAACCGTAGGCGGAGGAGACGATGCCTTCAACACCTTTTTCAGTGAAACTGGTGCAGGGAAGCACGTTCCTCGCGCTGTGTT TGTCGATCTTGAGCCCACTGTCATCGACGAGGTGAGGACTGGAAGCTACCGCCAGCTCTTCCACCCTGAGCAACTTATCAGCGGCAAGGAAGACGCTGCA AACAACTTTGCTCGTGGCCACTACACAATTGGTAAAGAGATTGTTGACCTGTGCTTGGACCGCATCAGAAAGCTCGCTGACAACTGCACTGGTCTCCAAG GTTTCTTGGTGTTCAATGCAGTCGGTGGTGGTACTGGATCTGGTCTTGGATCCCTCCTCTTGGAGCGTCTCTCTGTGGACTATGGAAAGAAGTCCAAGCT TGGTTTCACCGTTTATCCATCGCCCCAAGTGTCAACTTCTGTTGTGGAGCCTTACAACAGTGTCCTCTCAACCCATTCCCTCCTTGAGCACACCGATGTT GCTGTTCTTCTCGACAATGAAGCAATATATGACATCTGCAGGCGCTCTCTTGACATCGAGCGACCCACCTACCACAACTTGAACCGTCTGATCTCTCAGG TGATCTCATCCCTCACTGCATCTCTAAGGTTCGATGGTGCTCTCAATGTGGATGTTACAGAGTTCCAGACCAACTTGGTCCCGTATCCAAGGATCCATTT CATGCTTTCGTCATATGCTCCAGTCATCTCGGCTGAGAAGGCGTACCATGAGCAGCTGTCCGTTGCTGAGATCACCAACAGTGCCTTCGAGCCCTCTTCC ATGATGGCCAAGTGCGACCCTCGCCACGGCAAGTACATGGCGTGCTGTCTGATGTACCGAGGTGACGTGGTTCCCAAGGATGTCAACGCAGCTGTGGCGA CCATCAAGACAAAGAGGACCATCCAGTTCGTGGACTGGTGCCCAACTGGATTCAAGTGTGGTATCAACTACCAGCCACCGACTGTGGTCCCAGGAGGCGA CCTTGCCAAGGTGCAGAGGGCTGTGTGCATGATCTCCAACTCCACCAGTGTGGCGGAGGTGTTTGGGCGAATTGACCACAAGTTTGATCTCATGTACGCC AAGCGTGCATTCGTCCACTGGTATGTTGGTGAGGGTATGGAGGAAGGAGAGTTCTCTGAGGCGCGTGAGGATCTGGCTGCTCTTGAGAAGGACTATGAGG AGGTTGGCGCTGAGGCTCCCGAGGATGGAGAAGATGAAGGTGATGAGTACTGA
AA sequence Show only first row Show all	>Lus10035422 pacid=23170476 polypeptide=Lus10035422 locus=Lus10035422.g ID=Lus10035422.BGIv1.0 annot-version=v1.0 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAA NNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDV AVLLDNEAIYDICRRSLDIERPTYHNLNRLISQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSS MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFGRIDHKFDLMYA KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEAPEDGEDEGDEY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50010		TUA2	tubulin alpha-2 chain (.1)		Lus10035422 [exp]	0	1
AT1G50010		TUA2	tubulin alpha-2 chain (.1)		Lus10031032 [exp]	1.0	0.9512
AT5G11710			ENTH/VHS family protein (.1)		Lus10005498 [exp]	2.0	0.9211
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Lus10042201 [exp]	2.4	0.9071
AT5G12250		TUB6	beta-6 tubulin (.1)		Lus10026813 [exp]	4.6	0.8921
AT1G70090		GATL9, LGT8	GALACTURONOSYLTRANSFERASE-LIKE...		Lus10030821 [exp]	4.9	0.8879
AT4G33625			unknown protein		Lus10020442 [exp]	5.5	0.8468
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10004040 [exp]	6.3	0.9051
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10009248 [exp]	8.5	0.8966
AT3G17440		ATNPSN13, NPSN1...	novel plant snare 13 (.1.2)		Lus10018338 [exp]	9.5	0.8974
AT5G66920		SKS17	SKU5 similar 17 (.1)		Lus10022465 [exp]	9.8	0.8569

Compare expression of checked genes

Lus10035422 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.