Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57270 266 / 3e-87 BG1 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) AT3G57260 262 / 1e-85 AtPR2, PR-2, PR2, BG2, BGL2 PATHOGENESIS-RELATED PROTEIN 2, "beta-1,3-glucanase 2", beta-1,3-glucanase 2 (.1) AT3G57240 253 / 4e-82 BG3 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) AT5G56590 235 / 4e-73 O-Glycosyl hydrolases family 17 protein (.1) AT4G16260 204 / 5e-63 Glycosyl hydrolase superfamily protein (.1) AT1G77780 202 / 3e-62 Glycosyl hydrolase superfamily protein (.1) AT3G07320 196 / 1e-58 O-Glycosyl hydrolases family 17 protein (.1) AT4G26830 194 / 5e-58 O-Glycosyl hydrolases family 17 protein (.1) AT5G20340 191 / 7e-58 BG5 beta-1,3-glucanase 5 (.1) AT2G05790 192 / 2e-57 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031033 [exp] 363 / 1e-127 AT3G57270 167 / 1e-50 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10031037 [exp] 368 / 3e-127 AT3G57240 312 / 3e-105 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10031035 [exp] 318 / 6e-108 AT3G57260 218 / 1e-68 PATHOGENESIS-RELATED PROTEIN 2, "beta-1,3-glucanase 2", beta-1,3-glucanase 2 (.1) Lus10031036 [exp] 298 / 1e-100 AT3G57270 210 / 3e-66 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10002807 [exp] 254 / 2e-82 AT3G57240 339 / 7e-116 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10014109 [exp] 245 / 3e-79 AT3G57270 361 / 1e-124 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10027860 [exp] 244 / 1e-78 AT3G57260 322 / 4e-109 PATHOGENESIS-RELATED PROTEIN 2, "beta-1,3-glucanase 2", beta-1,3-glucanase 2 (.1) Lus10019801 [exp] 244 / 1e-78 AT3G57270 367 / 6e-127 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10014110 [exp] 238 / 1e-76 AT3G57270 359 / 2e-124 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G255100 [exp] 259 / 1e-84 AT4G16260 369 / 9e-128 Glycosyl hydrolase superfamily protein (.1) Potri.006G046100 [exp] 258 / 4e-84 AT3G57270 370 / 4e-128 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.006G048100 [exp] 255 / 7e-83 AT3G57270 382 / 6e-133 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.016G057600 [exp] 249 / 1e-80 AT3G57270 414 / 2e-145 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.016G057400 [exp] 248 / 4e-80 AT3G57270 416 / 4e-146 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.005G172000 [exp] 233 / 5e-74 AT1G77780 338 / 6e-115 Glycosyl hydrolase superfamily protein (.1) Potri.010G142800 [exp] 224 / 1e-70 AT4G16260 433 / 2e-152 Glycosyl hydrolase superfamily protein (.1) Potri.009G050300 [exp] 221 / 2e-70 AT4G16260 285 / 5e-95 Glycosyl hydrolase superfamily protein (.1) Potri.002G089200 [exp] 220 / 3e-69 AT1G77780 309 / 6e-104 Glycosyl hydrolase superfamily protein (.1) Potri.010G143166 [exp] 218 / 6e-69 AT4G16260 432 / 5e-153 Glycosyl hydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Lus10035423 pacid=23170529 polypeptide=Lus10035423 locus=Lus10035423.g ID=Lus10035423.BGIv1.0 annot-version=v1.0 ATGTCGTCGCTACACCTTATCATGTTTGTTCTCCAGATGCTTGCTACGGCTCGCCGTTTGTACGTAGATGCATCGATCGGTGTGTGTTACGGAGGCAAAG GAGACAAGCTACCATCGATCAAACAAGTAATATCCTTGGTGCAAGAACACAACATCACCCGGATGCGGATCTATGACCCGGATCCGAAAATCCTCCGAAC CCTACGAGGAACCAACATCGAACTCTTCGTAGACATCACAGTAGACCACATCATACCCTTAGCCTCAAGCCAAGCTGCCTCCGATGAATACGTCCGCCGC CACATCCAACCTTATGTCGGCGATGTCAAGTTTCGTTACTTCTCCGTGGGAAACGAGATCGACCCATGGTTCAATGAGTTTCCGTACCTCGTTCAAGCAA TCGAAAACATGCAGAGATCGATCACCTCCATCGGATTGAACGACACAAAAGTCTCCACTACCATCAGGTACACACTGAAAAAGTCGTTCCCTCCTTCCAA AGGCGCTTTCACCGCCGAACTGGACGTCCTGATGAGACCGTTGGTGAACGTATTGAAGCGTAACGGAGCGCCGTTGATGGTGAACTTGCACCCTTACTAC GGTTACGGGCTGGTGCCGAGCACACCGCGTGAGTACGTGTTCTTCGGGGAAGGGTATGAAGGGGTGAAGGACGGAGAATATACGTACAGGAACATGTTTG ACGCTCAGGTGGACGCGATGTACGTGGCGCTGGAGAGGTACAAGGGCGGCAAGACGGTGAAGGTGGTGGTGGCGGAGACGGGGTGGCCGACGGCGGGGGA TCTTGACGGGATGGCGTCGGTAGAGAATGCCAAAGAGTTTAACGGGAATTTGGCGAAGCATGTGAAATTAGGGACGCCGAGGAGGCCCGGGGAGGAGATA GAGACTTATGTTTTTGAGTTGTTTAATGAGAATCTCAAGACCCCCGTCGGGACTGAGAACTACTGGGGGGTTTTCTATGCGGATAAGAGTCCGATTTACA CTATGACTTTCCAGTGA
AA sequence Show only first row Show all	>Lus10035423 pacid=23170529 polypeptide=Lus10035423 locus=Lus10035423.g ID=Lus10035423.BGIv1.0 annot-version=v1.0 MSSLHLIMFVLQMLATARRLYVDASIGVCYGGKGDKLPSIKQVISLVQEHNITRMRIYDPDPKILRTLRGTNIELFVDITVDHIIPLASSQAASDEYVRR HIQPYVGDVKFRYFSVGNEIDPWFNEFPYLVQAIENMQRSITSIGLNDTKVSTTIRYTLKKSFPPSKGAFTAELDVLMRPLVNVLKRNGAPLMVNLHPYY GYGLVPSTPREYVFFGEGYEGVKDGEYTYRNMFDAQVDAMYVALERYKGGKTVKVVVAETGWPTAGDLDGMASVENAKEFNGNLAKHVKLGTPRRPGEEI ETYVFELFNENLKTPVGTENYWGVFYADKSPIYTMTFQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10035423 [exp]	0	1
AT2G37470			Histone superfamily protein (....		Lus10006484 [exp]	2.2	0.7385
AT3G25900		HMT-1, ATHMT-1	Homocysteine S-methyltransfera...		Lus10034320 [exp]	5.5	0.6963
AT5G24130			unknown protein		Lus10001061 [exp]	6.9	0.7406
AT1G45688			unknown protein		Lus10010232 [exp]	7.0	0.7645
AT3G28180		ATCSLC4, CSLC4,...	CELLULOSE-SYNTHASE LIKE C4, Ce...		Lus10039475 [exp]	8.8	0.7601
AT1G34580			Major facilitator superfamily ...		Lus10020934 [exp]	8.8	0.6933
					Lus10006099 [exp]	11.8	0.6683
AT4G37840		HKL3	hexokinase-like 3 (.1)		Lus10011584 [exp]	13.7	0.7078
					Lus10026794 [exp]	17.1	0.7225
					Lus10006920 [exp]	19.9	0.6963

Compare expression of checked genes

Lus10035423 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.