Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32170 458 / 2e-160 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT2G32160 435 / 8e-152 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031038 [exp] 504 / 8e-179 AT2G32170 529 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G023400 [exp] 482 / 5e-170 AT2G32170 648 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.016G021900 [exp] 474 / 4e-167 AT2G32170 616 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.016G021400 [exp] 412 / 5e-143 AT2G32170 553 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07942 [flax] [poplar] N2227 N2227-like protein
Representative CDS sequence Show only first row Show all	>Lus10035424 pacid=23170659 polypeptide=Lus10035424 locus=Lus10035424.g ID=Lus10035424.BGIv1.0 annot-version=v1.0 ATGTTCGACGAAAGAGCAGGCGGAGCCGTCGACGATGAGGAGCGCCACCGTCAAAAGAAGCTAGAAGAGGCTCTCGAGGTCCAATCTCTCCGCCGTATTA TCACCGCTTATCTAAACTATCCTGAAGCTGCAGAGGATGATGTCAAAAGATATGAAAGGTCCTATAGAAAGCTTTCACCTGCGCACAAGGACACGTCGCA TGAGTGCTCGGATCCATCATTTCAGTTTAACGTTCCCCTTGTTGATGTTGATAAGGTCCGCTGTATAGTAAGGAATATAGTTAGAGACTGGGCATCAGAG GGACAAAAAGAACGGGATGAATGCTACAAACCTATTCTTGAAGAGCTAGATTCTCAATTTCCAAATCGTTCTAGGGAGAGCGCTCCTGCTTGTTTGGTAC CTGGTGCTGGACTCGGGCGACTAGCATTGGAGATATCACGCTTGGGTTTCGCGAGCCAAGGAAATGAGTTTTCATACTACATGATGATATGCTCTAGTTT CATTCTTAATCACGCTGAAACTGTTGGGGAGTGGACTATATATCCATGGATCCATAGCAACTGTAACTCGCTTTCGGATAGTGATCAACTTCGTCCTGTG TCGATACCAGATATTCATCCAGCAAGTGCAGGGATTACGGAAGGATTTTCCATGTGCGGGGGCGACTTTGTCGAAGTCTATTCTGATCCAAGTCAAGAAG GATGCTGGGATGCAGTTGTGACCTGTTTCTTCATTGATACAGCACACAACATTGTAGAGTATATCGAAACCATATCAAAGATTCTAAAAGATGGAGGAGT ATGGATAAACTTTGGTCCCTTGCTGTACCATTTTGCAGACATGTACGGGCAAGAAGATGAGATGTCTATTGAACTTAGCTTGGAGGACGTGAAACGAGTC GCCCTGCATTATGGGTTCGAGTTTGAGAAGGAAAAGACGATTGAGACTACTTACACAGTAAATCCTCGGTCAATGATGCAAAACCATTACTTTGCTGCAT TTTGGACTGCGAGAAAGGTTTCGAAAACCAGGTAG
AA sequence Show only first row Show all	>Lus10035424 pacid=23170659 polypeptide=Lus10035424 locus=Lus10035424.g ID=Lus10035424.BGIv1.0 annot-version=v1.0 MFDERAGGAVDDEERHRQKKLEEALEVQSLRRIITAYLNYPEAAEDDVKRYERSYRKLSPAHKDTSHECSDPSFQFNVPLVDVDKVRCIVRNIVRDWASE GQKERDECYKPILEELDSQFPNRSRESAPACLVPGAGLGRLALEISRLGFASQGNEFSYYMMICSSFILNHAETVGEWTIYPWIHSNCNSLSDSDQLRPV SIPDIHPASAGITEGFSMCGGDFVEVYSDPSQEGCWDAVVTCFFIDTAHNIVEYIETISKILKDGGVWINFGPLLYHFADMYGQEDEMSIELSLEDVKRV ALHYGFEFEKEKTIETTYTVNPRSMMQNHYFAAFWTARKVSKTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32170			S-adenosyl-L-methionine-depend...		Lus10035424 [exp]	0	1
AT1G31220			Formyl transferase (.1)		Lus10013428 [exp]	13.9	0.8285
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10042891 [exp]	16.2	0.8346
AT5G48870		SAD1	SUPERSENSITIVE TO ABA AND DROU...		Lus10011877 [exp]	22.7	0.8270
AT5G66240			Transducin/WD40 repeat-like su...		Lus10017157 [exp]	22.8	0.8065
AT4G15950		RDM2, NRPE4, NR...	RNA-DIRECTED DNA METHYLATION 2...		Lus10039097 [exp]	25.9	0.8281
AT5G38720			unknown protein		Lus10023232 [exp]	28.4	0.8277
AT1G65700			Small nuclear ribonucleoprotei...		Lus10028183 [exp]	33.8	0.7826
AT2G47640			Small nuclear ribonucleoprotei...		Lus10026556 [exp]	44.6	0.8264
					Lus10029394 [exp]	46.3	0.8126
AT3G52260			Pseudouridine synthase family ...		Lus10023503 [exp]	52.2	0.7686

Compare expression of checked genes

Lus10035424 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.