Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G30495 198 / 9e-65 Fcf2 pre-rRNA processing protein (.1.2) AT1G54770 179 / 1e-57 Fcf2 pre-rRNA processing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031040 [exp] 374 / 5e-134 AT5G30495 201 / 6e-66 Fcf2 pre-rRNA processing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G206400 [exp] 269 / 9e-93 AT5G30495 211 / 4e-70 Fcf2 pre-rRNA processing protein (.1.2) Potri.010G002100 [exp] 263 / 1e-90 AT5G30495 216 / 6e-72 Fcf2 pre-rRNA processing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08698 [flax] [poplar] Fcf2 Fcf2 pre-rRNA processing
Representative CDS sequence Show only first row Show all	>Lus10035425 pacid=23170537 polypeptide=Lus10035425 locus=Lus10035425.g ID=Lus10035425.BGIv1.0 annot-version=v1.0 ATGATGAGGGAAGGAGGAGAGGGAAAGGCTGTGATAGGGCTCTCATGGCAGCCTAAGTTGATTCTGCCGCCGTCTGCTTCGTCATCTCACAACCCTACTC CAGATCAGTCTGGTGGTTCTCTTTGGAAGGCTTCCCAGCAGCTTGTAGATGGATTGTATTTCCCCCCCAATAATCCTGCTAAGTTGAATAAACTACAGAG GAAGCAGGTCAAGGATACTCTCGGAAAGGACTGGTTTGATATGCCAGCTCCAACTATCACACCTGAATTAAAGAAAGATCTCCAGATACTCAAGCTAAGG GGTGCTATAGACCCAAAGAGGCACTACAAGAAAGGAGATTCCAAAGCTCTTCCAAAGTACTTTCAGGTGGGCACAGTCGTCGAATCTCAAATGGAGTACT TTTCTGCTAGGCTGACAAAGAAGGAGAGGAAAGCAACTCTTGCAGATGAGCTCCTCGCCGATCAGAACTTCAAAAATTACAGGAAGAGAAAGGTTAGAGA GATCGAAGAACAGAACCGTCCTGGGGGGAAAGATAAATGGAAGATAAGGGGGAAAGAGTCGTTGAAGCGAGCAAAGGAAAAGAGGCGTTAA
AA sequence Show only first row Show all	>Lus10035425 pacid=23170537 polypeptide=Lus10035425 locus=Lus10035425.g ID=Lus10035425.BGIv1.0 annot-version=v1.0 MMREGGEGKAVIGLSWQPKLILPPSASSSHNPTPDQSGGSLWKASQQLVDGLYFPPNNPAKLNKLQRKQVKDTLGKDWFDMPAPTITPELKKDLQILKLR GAIDPKRHYKKGDSKALPKYFQVGTVVESQMEYFSARLTKKERKATLADELLADQNFKNYRKRKVREIEEQNRPGGKDKWKIRGKESLKRAKEKRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G30495			Fcf2 pre-rRNA processing prote...		Lus10035425 [exp]	0	1
AT4G01100		ADNT1	adenine nucleotide transporter...		Lus10033947 [exp]	15.1	0.6235
AT3G26810		AFB2	auxin signaling F-box 2 (.1)		Lus10035160 [exp]	31.7	0.6186
AT2G03820			nonsense-mediated mRNA decay N...		Lus10023975 [exp]	32.3	0.5927
AT2G06040			unknown protein		Lus10034779 [exp]	34.0	0.5888
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10001726 [exp]	70.1	0.5823
AT3G22430			unknown protein		Lus10021918 [exp]	97.2	0.5535
AT5G22840			Protein kinase superfamily pro...		Lus10020515 [exp]	121.5	0.5504
AT1G18850			unknown protein		Lus10024247 [exp]	123.0	0.5563
AT3G25440		LOH1	LAG One Homologue 1, RNA-bindi...		Lus10009566 [exp]	183.0	0.4866

Compare expression of checked genes

Lus10035425 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.