Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41520 621 / 0 TPR15 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) AT5G12430 551 / 2e-178 TPR16 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) AT3G62570 97 / 2e-20 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G78120 89 / 4e-18 TPR12 tetratricopeptide repeat 12, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G58620 84 / 4e-16 TTL4 tetratricopetide-repeat thioredoxin-like 4 (.1) AT2G47440 82 / 6e-16 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02100 82 / 6e-16 Heat shock protein DnaJ with tetratricopeptide repeat (.1) AT1G02650 82 / 1e-15 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G42580 78 / 2e-14 VIT, TTL3 VHI-INTERACTING TPR CONTAINING PROTEIN, tetratricopetide-repeat thioredoxin-like 3 (.1) AT1G53300 77 / 5e-14 TTL1 tetratricopetide-repeat thioredoxin-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031042 [exp] 1642 / 0 AT2G41520 505 / 4e-160 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Lus10005022 [exp] 554 / 4e-179 AT5G12430 791 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10019041 [exp] 551 / 6e-178 AT5G12430 787 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10031041 [exp] 241 / 4e-74 AT2G41520 128 / 5e-35 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Lus10002438 [exp] 91 / 1e-18 AT4G02100 648 / 0.0 Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10010272 [exp] 84 / 2e-16 AT4G02100 702 / 0.0 Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10036335 [exp] 82 / 9e-16 AT4G02100 645 / 0.0 Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10023181 [exp] 75 / 9e-14 AT5G03160 507 / 2e-178 homolog of mamallian P58IPK (.1) Lus10015078 [exp] 74 / 2e-13 AT5G03160 638 / 0.0 homolog of mamallian P58IPK (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G047700 [exp] 833 / 0 AT2G41520 640 / 0.0 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Potri.016G043900 [exp] 808 / 0 AT2G41520 612 / 0.0 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Potri.009G050200 [exp] 593 / 0 AT5G12430 821 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.001G255000 [exp] 558 / 7e-180 AT5G12430 738 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.014G122300 [exp] 92 / 5e-19 AT4G02100 637 / 0.0 Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.002G197300 [exp] 90 / 3e-18 AT4G02100 648 / 0.0 Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.005G166300 [exp] 88 / 1e-17 AT5G65160 436 / 5e-145 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.005G076800 [exp] 86 / 8e-17 AT5G65160 619 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.002G094800 [exp] 79 / 9e-15 AT5G65160 451 / 2e-152 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.007G091200 [exp] 79 / 1e-14 AT5G65160 570 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10035427 pacid=23170593 polypeptide=Lus10035427 locus=Lus10035427.g ID=Lus10035427.BGIv1.0 annot-version=v1.0 ATGAACAAGTTGAACATTGACAAACCTAAGCATCTTGATGAAGCTTACGACAAATATTCGTGTCATGACAGTGTTCCTTCATTTGCATTCGGAGGTAGTA AAGTAGCTACCGGTTTTTCTTCTAGCAGTGTGAATGGTGAAACATGTGAAGGGAGTATGCCAGATGCTAAAGTTGCTGAGGTTACTGAAAGTGAGAAGTT AGGATTAAACAAGGAGCAGAATCCTGCTATGCCTTGTGCTTCAAATGGATATTCTAGCTCAGAGCCATCTAGAATGCAGTCTGAATTTGCAAGTTCTTCC TTTGAGGGCGGAATAGAGCATGGTCAAGTTAGTGATGACTCAGAGTTCAGCCAAGCGGCTTCAACTTCTTCATCTTCATGGGTTGGAATTGGCTCTGAAG GTTCAGATGCACCTGATGTGGAGCCTGTGAGAGGTGAAAAAAATTCATGTTCAACAAGTTCTTCTGATGCATTACGGGTTCCAGTTACAGAATTCAGAAC ACCAGAATGGGATCCTGCTCGTTTAAAAGCAAGCTTATTCCCCAAATCCAATAAGAAATTGGATCCTACTTCAAAAACTAGGTTGACAAGGGATAAGAAG TTGAAGCCATCTATAGGGAGGAGGAAGCATCCTTCCCAGCATAATCACCTGCCTGATCAAGCTCATGTAAAACATGATGACAGCCCCAAAGAGAATTTGA AATCCCCACAAAGTTCCTCGCCGATGGATTTTTCACCATACAACGGTAATGCAACAGAAGAGCAATTTACTTTTAGTTATAATGTTGAATCAAATGACTC TGAGTCACATCCAACCATGAATGCTGAAGATCATGGTAAATCAAGAGAGGAAGTCAGTGGAAGTCATGACTGTCATTCTGAAAGGCATTCGACTGATTTT CTTGTAGGGGCAAGAATTACCCTCTCTGGTTCTGATGCTGAACCGGTCTACGGTAACAGTAGTAGTGGTGTGATTGCGGACACTTTAAGTAAGGAGAGTA GCAAGCAGGTGCAATTTCATTGCGATCCTGAACTAGAAATGAAAACAGGGATGTTTTCTTTTGCTGCTGGCTGTTTCGAAAATAATTTACCTGAACAGAG GCATCGGTATAAAAAGAAAAACCGGAGGAAACCCAATGGATCAAGTGTTATTTCATCAAGCCCCGATGTGAAGCTTCATCCATCATCTCTGAAGAATGTG ACCGATAACACCACAAATTCATCTTTGGACAAAAACAGTACACAAGAGAAAACTGGCCATTTATTTTCAGAAGCAATTATGGGGAACAACCCTGACTTGA AGGATCAGGTGACAAGGCCTTTTGTACCACCAACTGTTGCCATTGTCGGAGCATGTGAAGCATGGCGACACAGAGGAAATCAAGCTTATAAAGCTAGTGA TCTCTCAAAAGCTGAGGACTTCTACACACAAGGCATAAATTCAGTTCCTCGTGCTGAGTTATCAGCATGCCTAGAGCCTCTTGTTATTTGTTATAGCAAC CGGGCAGCAACACGGTTATCTCTTGGCAATATCAGGGAAGCCTTACAAGATAGCCTGATGGCTGCTTCTTTGAATCCCAGCTTTCTTAAAGCTCAGATGA GAGCTGCAAATTGTTATCTCCTGCTGGGGGAAGTCAACGATGCACTGCACCATTTCAATAAATGCATGGAAGCCAGCAATGGTGTTTGTTTGGATCGGAG AATCACTATAGAAGCAGCTAGTGGGGTTCAAAAGGCTCAGAAAGTTGCTGATTGTATTGATCGTTCTATAGTGCTATTGGAACAAAAAACACCTGATGCT TCATTGTCTGCGTTAGAGATACTTGCTGAAGCTTTATTGCTTAGTCCATATTCAGAAAGATTGCTGCAATTCAAAGCAGAATTCACGTTCATGTTAAAGA AATATGAAGAGGTAATTAAATTGTGTGAGCAGACTCTTCCTGCCGGCGAAGCAAATTTTATTTCCATGGGCAATGATGGCTTAGCAGTCGACGATATTCA TAGGTGCTCGTTCCCAAGGCTGTGGAGATGGCGGTTGATATCAAAATGCTACTTTAATTTGGGGAAGTTAGATGATGCCCTTGATTTACTCAGGAAGATA GAGAAGATGGGACCCATCAGCGACAAGCATGCAAGTGGGCTGTTCGAATCCTCAATTTCTCTAATTGCAACCATCCGTGATCTACTAAATCGGAAGAGTG CTGGGAATGATGCATTCCAATGTGGAAACTATGAAGAAGCTGTGGAGCAGTACTCAGCTGCTTTATCTAGCAACATTGAATCACGCCCTTTTACTGCTAT CTGTTTCTGTAACCGTGCTGCCGCATTCCAAGCTATGGGCAAGTTAGCCGATGCCATAGCTGACTGCAGTCTAGCGGTAGCACTTGATGAAAGTTACTCA AAGGCTGTCTCAAGGAGAGCCACCTTGCATGAGATGATCAGAGATTATGGTCAATCATCAAGTGATCTTCAAAGATTTATCGCCATTCGGGAAAATAAAT ATGATGTTGGGCAGTCTAGCACACCTCAGAAATCTACCGGCGGCTCAAGAGAGCTAAAGCAATATCGTCGGAGATTGTCCTCAATGGAAGAAGAAGCAAA AAAGGGAATCCCACTGGATTTATACAAGATACTGGGTGTTAAAGAATCTGACTCAGCAGCCGATATTAAAAAGGCATACCGTAAGGCAGCACTGAGACAT CATCCTGATAAGGCTGGTCAGTTTCTTGCACGATCTGAAAGTGGTGATGGGCTGTGGAAGGAAATCGTTGATAAGGTTCACCTTGATGCCGATAAATTGT TCAAAATGATTGGAGAAGCATATGCCGTACTCTCAGACTCGACGAAGAGATCCAAGTACGATCTTGAAGAGGAAATCCGGAAAGTATCAAAAGAAAACCA AGGGAACAGCTCCAATAGAAGGACTACTGCTGAGACTAAGTACAGCTCTCCATTTGGGAGCAGCGGGTACCGAAGGAATCAACAAGACAATTGGAAGACA TACGGTCATTCATATTATCGATGGTGA
AA sequence Show only first row Show all	>Lus10035427 pacid=23170593 polypeptide=Lus10035427 locus=Lus10035427.g ID=Lus10035427.BGIv1.0 annot-version=v1.0 MNKLNIDKPKHLDEAYDKYSCHDSVPSFAFGGSKVATGFSSSSVNGETCEGSMPDAKVAEVTESEKLGLNKEQNPAMPCASNGYSSSEPSRMQSEFASSS FEGGIEHGQVSDDSEFSQAASTSSSSWVGIGSEGSDAPDVEPVRGEKNSCSTSSSDALRVPVTEFRTPEWDPARLKASLFPKSNKKLDPTSKTRLTRDKK LKPSIGRRKHPSQHNHLPDQAHVKHDDSPKENLKSPQSSSPMDFSPYNGNATEEQFTFSYNVESNDSESHPTMNAEDHGKSREEVSGSHDCHSERHSTDF LVGARITLSGSDAEPVYGNSSSGVIADTLSKESSKQVQFHCDPELEMKTGMFSFAAGCFENNLPEQRHRYKKKNRRKPNGSSVISSSPDVKLHPSSLKNV TDNTTNSSLDKNSTQEKTGHLFSEAIMGNNPDLKDQVTRPFVPPTVAIVGACEAWRHRGNQAYKASDLSKAEDFYTQGINSVPRAELSACLEPLVICYSN RAATRLSLGNIREALQDSLMAASLNPSFLKAQMRAANCYLLLGEVNDALHHFNKCMEASNGVCLDRRITIEAASGVQKAQKVADCIDRSIVLLEQKTPDA SLSALEILAEALLLSPYSERLLQFKAEFTFMLKKYEEVIKLCEQTLPAGEANFISMGNDGLAVDDIHRCSFPRLWRWRLISKCYFNLGKLDDALDLLRKI EKMGPISDKHASGLFESSISLIATIRDLLNRKSAGNDAFQCGNYEEAVEQYSAALSSNIESRPFTAICFCNRAAAFQAMGKLADAIADCSLAVALDESYS KAVSRRATLHEMIRDYGQSSSDLQRFIAIRENKYDVGQSSTPQKSTGGSRELKQYRRRLSSMEEEAKKGIPLDLYKILGVKESDSAADIKKAYRKAALRH HPDKAGQFLARSESGDGLWKEIVDKVHLDADKLFKMIGEAYAVLSDSTKRSKYDLEEEIRKVSKENQGNSSNRRTTAETKYSSPFGSSGYRRNQQDNWKT YGHSYYRW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41520		TPR15	tetratricopeptide repeat 15, H...		Lus10035427 [exp]	0	1
AT2G02560		TIP120, HVE, ET...	HEMIVENATA, CULLIN-ASSOCIATED ...		Lus10026261 [exp]	2.2	0.9265
AT2G41520		TPR15	tetratricopeptide repeat 15, H...		Lus10031042 [exp]	3.7	0.9232
AT5G55300		MGO1, TOP1BETA,...	TOPOISOMERASE 1, MGOUN 1, DNA ...		Lus10032573 [exp]	4.5	0.9181
AT1G25540		MED25, PFT1	PHYTOCHROME AND FLOWERING TIME...		Lus10041483 [exp]	9.4	0.9002
AT4G32700		TEB	TEBICHI, helicases;ATP-depende...		Lus10022115 [exp]	10.6	0.9200
AT2G21440			RNA-binding (RRM/RBD/RNP motif...		Lus10042589 [exp]	11.2	0.9007
AT5G60040		NRPC1	nuclear RNA polymerase C1 (.1....		Lus10015971 [exp]	11.5	0.8973
AT5G47690			binding (.1.2.3)		Lus10039082 [exp]	12.2	0.9122
AT5G15540		EMB2773, ATSCC2	EMBRYO DEFECTIVE 2773, ARABIDO...		Lus10015385 [exp]	12.6	0.8890
AT3G05680		EMB2016	embryo defective 2016 (.1.2)		Lus10013587 [exp]	14.2	0.9213

Compare expression of checked genes

Lus10035427 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.