Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025132 [exp] 176 / 2e-56 AT5G28950 55 / 1e-09 unknown protein Lus10006030 [exp] 98 / 2e-24 AT4G17260 124 / 9e-32 Lactate/malate dehydrogenase family protein (.1) Lus10007175 [exp] 93 / 6e-23 AT5G27260 67 / 2e-12 unknown protein Lus10007133 [exp] 65 / 8e-13 AT5G27260 46 / 8e-06 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035428 pacid=23170674 polypeptide=Lus10035428 locus=Lus10035428.g ID=Lus10035428.BGIv1.0 annot-version=v1.0 ATGGGAAGACGAAGACCTGGTTTGGTGTTTGGGAGTGGAGGTGCAACTGGACAAGGAGCTATCGGTGCTAACGAGCACAATACTTCGTTGAATGACTCTG GTTTTTCCTCGGTCAATGAGAGTTTGCTTGATGACGAGGCCACGACTCACTTCATGCAGAATGTCTTGAATGAAATTGTGGACATGCCAACTCTACCGAA CTTTGTTCCTAATGATGAACGTGCTAACTTGGAATCGAATGTTGGAGCTGAATCTAGAAATAGGCCTAGTAGAACTCCTGCTCGTAGGATTCAGCTAGAA TCATCCATCGAGGATCGTAAGGTGGAGGTGATTGAGCTTAGGCTAGCTATGGACAAAGTAGTTGAAAAAATAATTAACAAACCGTGTGGGGAGGACATTA GTACTGAACAAATGAAACGATCAATTATCGAGAACTTTGAGAATCTGCCCGGTTTGACTCGTCACCAGGTAGCTCCCAACGGGAGAGATCAAGATAGCAA GCAAGCAAATTTAATCTAA
AA sequence Show only first row Show all	>Lus10035428 pacid=23170674 polypeptide=Lus10035428 locus=Lus10035428.g ID=Lus10035428.BGIv1.0 annot-version=v1.0 MGRRRPGLVFGSGGATGQGAIGANEHNTSLNDSGFSSVNESLLDDEATTHFMQNVLNEIVDMPTLPNFVPNDERANLESNVGAESRNRPSRTPARRIQLE SSIEDRKVEVIELRLAMDKVVEKIINKPCGEDISTEQMKRSIIENFENLPGLTRHQVAPNGRDQDSKQANLI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10035428 [exp]	0	1
AT2G26480		UGT76D1	UDP-glucosyl transferase 76D1 ...		Lus10017203 [exp]	1.0	0.9012
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10037631 [exp]	5.6	0.6485
AT1G23030		PUB11	ARM repeat superfamily protein...		Lus10014900 [exp]	6.2	0.7893
AT4G39010		ATGH9B18	glycosyl hydrolase 9B18 (.1)		Lus10018077 [exp]	6.3	0.7124
					Lus10008926 [exp]	8.0	0.7407
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Lus10014436 [exp]	9.2	0.7892
AT1G28300	B3	LEC2	LEAFY COTYLEDON 2, AP2/B3-like...		Lus10015428 [exp]	10.6	0.7892
					Lus10003774 [exp]	11.8	0.7892
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10005596 [exp]	13.0	0.7892
AT4G10260			pfkB-like carbohydrate kinase ...		Lus10040562 [exp]	13.0	0.6860

Compare expression of checked genes

Lus10035428 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.