Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 749 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 717 / 0 EFR EF-TU receptor (.1) AT3G47110 683 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 682 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 680 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G46330 442 / 1e-136 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT2G24130 433 / 3e-135 Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 419 / 8e-129 Leucine-rich repeat protein kinase family protein (.1) AT1G28440 408 / 1e-125 HSL1 HAESA-like 1 (.1) AT4G28650 408 / 2e-125 Leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031043 [exp] 1668 / 0 AT3G47570 756 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033362 [exp] 1464 / 0 AT3G47570 784 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033329 [exp] 1162 / 0 AT3G47570 794 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033330 [exp] 1144 / 0 AT3G47570 783 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033384 [exp] 946 / 0 AT3G47570 739 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035726 [exp] 937 / 0 AT3G47570 716 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037310 [exp] 936 / 0 AT3G47570 744 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033363 [exp] 903 / 0 AT3G47570 758 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 813 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G102700 [exp] 809 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G099100 [exp] 805 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 803 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 801 / 0 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G145200 [exp] 788 / 0 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 785 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G033700 [exp] 785 / 0 AT3G47570 799 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G103000 [exp] 783 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007866 [exp] 781 / 0 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102900 [exp] 778 / 0 AT3G47570 843 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10035429 pacid=23170579 polypeptide=Lus10035429 locus=Lus10035429.g ID=Lus10035429.BGIv1.0 annot-version=v1.0 ATGAAGGATAACCAGAACTCTCATTTCCTGATTTCCTTCCTACTTCTTCTACTCCTAATCTCACTCCATAGTTGTCTTAATGCATCAGCAAACAACCTCA CCGACCGACTCGCCCTACTCGAATTCAAGAACGCGATAACCAGTGACCCCGATTCCATTCTGACCTCATGGAACGATTCCTTACATTTCTGCAACTGGCC GGGAATCACCTGCAACACTCAGCAGAGAGTCACTTCTCTGTTCTTGAAAAAACGCTACCTGGCAGGCACTCTATCACCACACATTGCCAACCTCACATTC CTCCAAACCATCAACCTACTCAACAACAGCTTCCACGGCCATATTCCCCCACAAATCGGCAACCTCCGCCGTCTCCAGGCACTTAATCTCACATCAAATT TCTTCACGGGGGAGATTCCACCCAACTTGACGCGTTGCTTGGACCTCACGACAATCCTGGTGGAAAAAAATAGCATTGGAGGAACCATTCCTCAAGATAT CGGCATGCTGTCCAAACTAACACGCTTGAGGATGGGATTCAACTTCCTGACGGGGCAGCTTCCGCCTTCCTTGGGGAACCTGACACAGCTTGTGGAGTTT GCCGTTGCCTATAATAATCTGGTCGGGGAAATTCCTGAGACGATCGGTCAGCTCTCCAGAATGAGTATATTCGTGGTGGCGGTAAACCAAATCAACGGTA CCATCCCTCCGTCGCTTTATAACTTGTCGTCCTTGACAAAGTTGACACTAATTTACAACCAATTTCATGGTAGAATCCCGGAGGATATCGGACTCACTCT GCCGAATCTCTTGGGATACTATATCTCCAGGAACTGGATGACCGGACCGATCCCGCAGTCGTTCTGCAATGCTTCTCGATTGTACGAGATCAACATGAAT CAGAACAGCCTGACCGGCACCATTCCGGCGTGTTTCGGGACTCTGTCAGGTTTTTTGTACCTAAATGTGGGTGCTAATAATCTCGGAACTGGTAAAGCTG GCGACTTTGATTTCATAACAGGTTTGAGTAATTGCAGCCAACTCAAGGAACTAGGTGTGAGCGAGAACAATCTCGGAGGGCCATTACCAGACTCTTTAAG GAACCTGTCGAATCAACTCTATCAATTGTATCTGGGAGTCAATCCGATCGGTGGGGAAATTCCTCAAGGGCTGAAGAATCTGGTCAGCTTGAATAAGCTG GACCTGATGAATTCGTTTCTCACAGGAAGCATTCCTACTTATCTTGGTGAGCTCAGAAATCTACAAGGACTATTGTTCAACGGGAACCAGTTATCCGGTC ACATTCCGGCCTCGTTCGGGAACCTGAGCCAATTGAACAAACTCGATGCATCCGATAACCAACTCCAAGGATCCGTTCCTATAAGTATGGGAAGCTGTCA ACAGCTAAACCTGTTGGATTTTTCCAACAACAAACTCGCCGGCGCGATTCCAAGAGAAATTTTCAGCCTTTCTTCCCTGTCAGCTGGATTCTATCTATCC AGAAACTCCTTCACCGGAGAACTTCCAGATGAAATCAGGAATCTAAGCAATTTGGAAGTTCTGGATCTGTCTTACAATAAGCTGACAGGTGGCATTCCAA TATCTATTGGAGACTGCAAATCCCTGAAATCTCTGTTTCTACAGAGCAACTCTTTCGATGGGGAAATCCCTTCAGCTCTTTCCTTCATCAAGGACATGGA AATATTGGATCTTTCCACAAATAAGTTCACTGGTGAGATCCCATCGGAGCTACAGAGCATTCTAGCTTTGCAAGCTTTGAATCTTTCCTTCAACGATTTG CAAGGCGAGGTTCCTGACAAAGGCATGTTTGCAAATACAAGTCATGGCTTTTTATTGTCTGTGACAGGGAACCCCTTGCTTTGTGGTGGTCCCATCGAGC TAAACTTGAAAAAGTGCCCAACCGCAAAAACAATTAAGCAGAAGCGAGCTGCAACGGTTAAGCTGACGCTTGAAATAGCGTTGCCGTCGCTGACTTTCCT CTTGCTGTCTGCAATTCTGTATCAGTGGACGTTGTGGAGATCAAGGAAGAAATCTGTTATTGGAGATACTATCTTGAGCCACTTTGTGATGGTTTCGTAC AAAGACCTCCATCAAGGAACTAATGGATTCTCTAGTGATAATTTGATTGGATCTGGTGGTTTCGGCACCATCTACAAAGGAGTTCTGAATCAAATCGGCC CGGCCGCCTTAGTAGTAGCTGTGAAAGTACTCAACATTCAGGGAAATAACAAAGCTGGTAAGAGCTTATTAGCTGAATGCAATGCGTTGAAAAACGTCCG GCACAGGAACCTTGTTAGAGTCCTGACTTACTGCTCTAGCTTAGATCACAAGGGAAACGATTTCAAGGCTTTGGTTTTCGAGTTCATGCCCAATGGTAGC GTGGAAGATTGGATGCACTCGGATCGTCACGACTTGATGAGCCCCGTTCAGAGGCTTAACATTTTGGTGGATGTTGCGTCTGCACTACACTATCTGCATG ATCTGTGTGATACTCCGGTCGTTCATTGTGACTTGAAGCCGAGCAATGTGCTTTTGGATGCTGATATGGTCGCTCATGTCGGAGACTTTGGTCTGGCGAG GATTATGTCGTCGTCGTCGAACAGTTCATCAGGAAATGAAAGTAGCACCATTGGAATCAGAGGAACTATTGGTTATGCCCCTCCAGAGTACGGAATGGGA ATGCCAATATCGATTGAAGGGGATGTGTATAGCTACGGAATCTTTGTACTAGAGATTCTCATCGGAAAAAGACCCACCAATGAGATGTTCAAAGACGGGA TGAATCTACGAGAATTTGTGAAAGCATCTATTCCAGATGGAATAACATCAGTACTAGACCCATCAATGTCTCTAATTTCCTTAACTACAACCGGAGATCA TCATAGGAGAATAGTAGGAAACGTGGAATTAGCAGATGATGATGAAAATAATAATAACAATAATAATCACAGGAGGAGGAGCATTGAAATTGTGGAATCG ACGGGTATGTCTGCAAGAGTCAAAGAGTGTTTGGTTTCGGTACTTGAAACTGGGTTGGGTTGCTCTACAGATAGTGCTGGAGAGCGTATGAAGACGGCTG ATGTTGCGAGAAAGATGGCTTCCTTGAGGAATGATTTTGTTGCAGCAACTTCTGTCGGGAGTCGCAGGCCACAACGGAGTTAA
AA sequence Show only first row Show all	>Lus10035429 pacid=23170579 polypeptide=Lus10035429 locus=Lus10035429.g ID=Lus10035429.BGIv1.0 annot-version=v1.0 MKDNQNSHFLISFLLLLLLISLHSCLNASANNLTDRLALLEFKNAITSDPDSILTSWNDSLHFCNWPGITCNTQQRVTSLFLKKRYLAGTLSPHIANLTF LQTINLLNNSFHGHIPPQIGNLRRLQALNLTSNFFTGEIPPNLTRCLDLTTILVEKNSIGGTIPQDIGMLSKLTRLRMGFNFLTGQLPPSLGNLTQLVEF AVAYNNLVGEIPETIGQLSRMSIFVVAVNQINGTIPPSLYNLSSLTKLTLIYNQFHGRIPEDIGLTLPNLLGYYISRNWMTGPIPQSFCNASRLYEINMN QNSLTGTIPACFGTLSGFLYLNVGANNLGTGKAGDFDFITGLSNCSQLKELGVSENNLGGPLPDSLRNLSNQLYQLYLGVNPIGGEIPQGLKNLVSLNKL DLMNSFLTGSIPTYLGELRNLQGLLFNGNQLSGHIPASFGNLSQLNKLDASDNQLQGSVPISMGSCQQLNLLDFSNNKLAGAIPREIFSLSSLSAGFYLS RNSFTGELPDEIRNLSNLEVLDLSYNKLTGGIPISIGDCKSLKSLFLQSNSFDGEIPSALSFIKDMEILDLSTNKFTGEIPSELQSILALQALNLSFNDL QGEVPDKGMFANTSHGFLLSVTGNPLLCGGPIELNLKKCPTAKTIKQKRAATVKLTLEIALPSLTFLLLSAILYQWTLWRSRKKSVIGDTILSHFVMVSY KDLHQGTNGFSSDNLIGSGGFGTIYKGVLNQIGPAALVVAVKVLNIQGNNKAGKSLLAECNALKNVRHRNLVRVLTYCSSLDHKGNDFKALVFEFMPNGS VEDWMHSDRHDLMSPVQRLNILVDVASALHYLHDLCDTPVVHCDLKPSNVLLDADMVAHVGDFGLARIMSSSSNSSSGNESSTIGIRGTIGYAPPEYGMG MPISIEGDVYSYGIFVLEILIGKRPTNEMFKDGMNLREFVKASIPDGITSVLDPSMSLISLTTTGDHHRRIVGNVELADDDENNNNNNNHRRRSIEIVES TGMSARVKECLVSVLETGLGCSTDSAGERMKTADVARKMASLRNDFVAATSVGSRRPQRS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10035429 [exp]	0	1
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001037 [exp]	3.2	0.8439
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006693 [exp]	4.9	0.8324
AT5G18460			Protein of Unknown Function (D...		Lus10006861 [exp]	6.0	0.8324
AT5G12060			Plant self-incompatibility pro...		Lus10023085 [exp]	6.9	0.8324
AT2G17030			F-box family protein with a do...		Lus10022619 [exp]	7.7	0.8240
					Lus10011218 [exp]	8.5	0.8231
AT5G14750	MYB	WER1, WER, AtMY...	WEREWOLF 1, WEREWOLF, myb doma...		Lus10007008 [exp]	8.7	0.6353
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10035616 [exp]	9.2	0.8212
AT5G03620			Subtilisin-like serine endopep...		Lus10003254 [exp]	9.4	0.7924
AT1G62310			transcription factor jumonji (...		Lus10004603 [exp]	9.9	0.7805

Compare expression of checked genes

Lus10035429 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.