Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035430 pacid=23170679 polypeptide=Lus10035430 locus=Lus10035430.g ID=Lus10035430.BGIv1.0 annot-version=v1.0 ATGCCAACTGCCGGCCTCCAAAATATGCCACCTAAAACATCCACCCCGCTCTCCCCATCCACCGCTGCAAGCACCCCCTCTGCTCGCCACACCTCCACTC CCACACCCGCCCTCACCTCCTTGTCACCCTATTCCCTCTCTACTGTTGGAACTGGCCTCACCAATCGACACCCCTTCACCTCCACCGCTGCCTCCAACAT CCACCGCCCACCAAGTCCTCTCAACAACCGCCCCACAACATCCACACCGACGCCGTCGGGTTTCACCCCTCGACCGGCGAGTCTGTTGCTGGCCGCCGAT GGCCAGAGGCCGGAGAGCCCCATGGGGGTAATTTTGGCCCCGCGCAAGCTGTCTCGGAGATTTTGA
AA sequence Show only first row Show all	>Lus10035430 pacid=23170679 polypeptide=Lus10035430 locus=Lus10035430.g ID=Lus10035430.BGIv1.0 annot-version=v1.0 MPTAGLQNMPPKTSTPLSPSTAASTPSARHTSTPTPALTSLSPYSLSTVGTGLTNRHPFTSTAASNIHRPPSPLNNRPTTSTPTPSGFTPRPASLLLAAD GQRPESPMGVILAPRKLSRRF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10035430 [exp]	0	1
AT5G43150			unknown protein		Lus10041628 [exp]	1.4	0.8452
AT3G27250			unknown protein		Lus10032077 [exp]	5.7	0.8451
AT1G70000	MYB		myb-like transcription factor ...		Lus10010733 [exp]	8.8	0.8441
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10033625 [exp]	11.7	0.8173
AT1G67600			Acid phosphatase/vanadium-depe...		Lus10011373 [exp]	11.8	0.8352
AT1G03350			BSD domain-containing protein ...		Lus10042670 [exp]	12.6	0.8267
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10027211 [exp]	17.9	0.8050
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Lus10031170 [exp]	19.9	0.8048
AT5G49610			F-box family protein (.1)		Lus10017086 [exp]	21.4	0.8025
AT4G11570			Haloacid dehalogenase-like hyd...		Lus10035494 [exp]	21.6	0.7908

Compare expression of checked genes

Lus10035430 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.