Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10210 347 / 6e-122 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT4G35750 186 / 7e-59 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT1G69340 66 / 5e-12 appr-1-p processing enzyme family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031044 [exp] 495 / 4e-180 AT3G10210 353 / 3e-124 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10041841 [exp] 209 / 4e-68 AT4G35750 323 / 7e-114 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10028388 [exp] 204 / 6e-66 AT4G35750 313 / 5e-110 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10021230 [exp] 197 / 2e-63 AT4G35750 265 / 7e-91 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10005640 [exp] 194 / 3e-62 AT4G35750 260 / 6e-89 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10030413 [exp] 71 / 1e-13 AT1G69340 917 / 0.0 appr-1-p processing enzyme family protein (.1) Lus10037119 [exp] 69 / 5e-13 AT1G69340 966 / 0.0 appr-1-p processing enzyme family protein (.1) Lus10036809 [exp] 65 / 9e-12 AT1G69340 971 / 0.0 appr-1-p processing enzyme family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G043166 [exp] 416 / 7e-149 AT3G10210 359 / 6e-127 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.005G246800 [exp] 196 / 5e-63 AT4G35750 282 / 9e-98 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.002G014700 [exp] 187 / 2e-59 AT4G35750 296 / 3e-103 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.005G107300 [exp] 166 / 3e-51 AT4G35750 284 / 1e-98 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.010G161500 [exp] 64 / 2e-11 AT1G69340 926 / 0.0 appr-1-p processing enzyme family protein (.1) Potri.008G093100 [exp] 62 / 7e-11 AT1G69340 935 / 0.0 appr-1-p processing enzyme family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035431 pacid=23170549 polypeptide=Lus10035431 locus=Lus10035431.g ID=Lus10035431.BGIv1.0 annot-version=v1.0 ATGGGAAGCTCTTCGACGGAGGATTTCTCGGTGTTCGTGCTGGCGTCGGATTTGGGAATAGACGCTACTCCCTTCTTGACGAATCGGCCTAGAGGAGATG GTGATGCCGACGGAGAAGACGACAGTGAGAACTGGCAAGATTGCTCGCAGTACCTTGTTTCCGACGAAGACTTCTCCGACCTCGATCTGCTCCAGTTCTT CTGCATCCAGGGCTCCGATCGATCCGGGAATCGCATCTTCCGTATCGTTGGCAAACACTTCCCCGCTCCAGTTATTAGTGCAGAGCGGCTGAAGAAGTAC ATTTTTCACAAAATATGCAGCGAGTTGCCTGAAGGACCATTCTCTATCGTCTACATGCATAGTACGGTGCAAAAAGAGGATAATTCTCCAGGTATAACCG TCTTGAGGTGGATATATGAAGAACTTCCAGGAAACTACAAGGACAGGCTTCAGACTGTGTACTTCATTCACCCCGGTCTCCGCTCAAGGCTTGCAATTGC TACCCTCGGCCGATTGTTCTTAACTGGAGGGTTGTACTGGAAGATCAAGTACGTGAGTCGGCTTCAGTATCTCTGGGCGGACATTAAGAAAGGGGAAGTG GAGATCCCTGAATTTGTTCAAAACCACGATGATGTGCTTGAGGATCGGCCACTAACTGATTATGGAATTGAACCAGACCCTTTTCATCTCAGTGGAGTCT CTGCAAATCCCTACTCGTTGGGAAGATACGAAGACCGATGGGGTTCAAGAGAGTTTGCCCTCTAG
AA sequence Show only first row Show all	>Lus10035431 pacid=23170549 polypeptide=Lus10035431 locus=Lus10035431.g ID=Lus10035431.BGIv1.0 annot-version=v1.0 MGSSSTEDFSVFVLASDLGIDATPFLTNRPRGDGDADGEDDSENWQDCSQYLVSDEDFSDLDLLQFFCIQGSDRSGNRIFRIVGKHFPAPVISAERLKKY IFHKICSELPEGPFSIVYMHSTVQKEDNSPGITVLRWIYEELPGNYKDRLQTVYFIHPGLRSRLAIATLGRLFLTGGLYWKIKYVSRLQYLWADIKKGEV EIPEFVQNHDDVLEDRPLTDYGIEPDPFHLSGVSANPYSLGRYEDRWGSREFAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10210			SEC14 cytosolic factor family ...		Lus10035431 [exp]	0	1
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10021552 [exp]	1.4	0.9241
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10038342 [exp]	2.2	0.9085
AT1G16180			Serinc-domain containing serin...		Lus10026111 [exp]	2.4	0.9188
AT3G15260			Protein phosphatase 2C family ...		Lus10009210 [exp]	4.4	0.8746
AT2G20740			Tetraspanin family protein (.1...		Lus10018584 [exp]	4.9	0.9034
AT2G35680			Phosphotyrosine protein phosph...		Lus10040174 [exp]	6.2	0.9107
AT2G28370			Uncharacterised protein family...		Lus10037399 [exp]	7.9	0.8717
AT1G70160			unknown protein		Lus10029209 [exp]	8.0	0.9097
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10024653 [exp]	8.3	0.8714
AT4G36195			Serine carboxypeptidase S28 fa...		Lus10028365 [exp]	8.4	0.9029

Compare expression of checked genes

Lus10035431 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.