Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41510 424 / 7e-146 ATCKX1, CKX1 cytokinin oxidase/dehydrogenase 1 (.1) AT3G63440 385 / 3e-131 ATCKX6, CKX6, ATCKX7 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) AT1G75450 305 / 7e-100 ATCKX6, ATCKX5, CKX5 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) AT5G21482 286 / 1e-92 ATCKX5, CKX7 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) AT5G56970 270 / 1e-86 ATCKX3, CKX3 cytokinin oxidase 3 (.1) AT4G29740 260 / 1e-83 ATCKX4, CKX4 cytokinin oxidase 4 (.1.2) AT2G19500 253 / 7e-80 ATCKX2, CKX2 cytokinin oxidase 2 (.1) AT5G06580 46 / 2e-05 FAD-linked oxidases family protein (.1) AT3G47930 44 / 0.0001 ATGLDH "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031046 [exp] 653 / 0 AT2G41510 423 / 1e-144 cytokinin oxidase/dehydrogenase 1 (.1) Lus10018039 [exp] 447 / 3e-158 AT2G41510 435 / 5e-150 cytokinin oxidase/dehydrogenase 1 (.1) Lus10016363 [exp] 412 / 1e-143 AT3G63440 483 / 9e-169 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10005317 [exp] 410 / 9e-143 AT3G63440 536 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10039574 [exp] 412 / 3e-142 AT3G63440 544 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10042035 [exp] 395 / 1e-136 AT2G41510 367 / 9e-123 cytokinin oxidase/dehydrogenase 1 (.1) Lus10024289 [exp] 314 / 2e-103 AT1G75450 717 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10003845 [exp] 310 / 3e-103 AT1G75450 578 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10026471 [exp] 280 / 5e-90 AT5G21482 655 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G044100 [exp] 437 / 2e-151 AT2G41510 752 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.006G047900 [exp] 424 / 2e-146 AT2G41510 772 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.003G203600 [exp] 419 / 1e-144 AT3G63440 799 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.001G020900 [exp] 412 / 1e-141 AT3G63440 800 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.002G030500 [exp] 317 / 2e-104 AT1G75450 785 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.005G232300 [exp] 315 / 1e-103 AT1G75450 802 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.006G152500 [exp] 290 / 3e-94 AT5G56970 603 / 0.0 cytokinin oxidase 3 (.1) Potri.006G221000 [exp] 268 / 2e-85 AT5G21482 674 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) Potri.007G066100 [exp] 243 / 1e-75 AT5G56970 500 / 3e-173 cytokinin oxidase 3 (.1) Potri.016G064800 [exp] 47 / 1e-05 AT5G06580 885 / 0.0 FAD-linked oxidases family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF09265 [flax] [poplar] Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Representative CDS sequence Show only first row Show all	>Lus10035433 pacid=23170519 polypeptide=Lus10035433 locus=Lus10035433.g ID=Lus10035433.BGIv1.0 annot-version=v1.0 ATGGAATCGCAATTCCCTTTCGCTTTCTGCAACCACATCATACTACACCTGAGATTCCTCGCCATCATTTCCCTCTGCTTCATACCTCACCAAACCCAAC CCTTCATCAACCAAACCCCTGAAACCATCCCCGGCGAAATTCCACCTTCCGTCGAAACACTAGCTCTACAACTAGATGGCTACTTCAGCTACCACGACAC AGCAGATGCTGCCAAGGACTTTGGAAACCGGTTCTTTTTCCGGCCAGTGGCTGTCCTACATCCGAGATCAGTGTCCGATATAGCGAGCACATTGAACCAC GTATCCAAAGTGGGAGGACTTACAGTGGCTGCTAGAGGGCGCGGCCACTCGCTCCATGGACAGGCACAAGCTCACGGTGGGGTGGTGATCGACATGGGGT CTCTTCCGAGGAGGAAGAGCTTTATTGGAGAAGATGATGGTGGGTACTACGTGGAGGTGTCAGGTGGGGAGATGTGGATTGATGTTCTTAAGGAGACATT GAAAGATGGGTTGGCGCCAAAATCGTGGACGGATTACTTGCATCTCACCGTTGGAGGGACGCTGTCCAACGGCGGCATCAGTGGCCAAGCTTTCCGGCAT GGCCCTCAGATCAATAACGTCCGGCAGTTGGAAGTTGTCACTGGTAAAGGAGAAGTGGATACCTGTTCAGAGAAGCAGAATGCAGAGCTGTTTTTCAGTG TGCTTGGAGGGCTTGGACAGTTCGGGATCGTGACCCGAGCAACAGTCGCTCTGGAACCTGCACCAGATATGGTGAAATGGATTAGAGTTCTGTACTCAGA TTTTTCCAAGTTTTCCAGGGACCAAGAACATTTGATATCGCTGGACGAATCATTCGACTATGTCGAAGGGTTCGTGATTATAAACCGAACTGGAATCCTC AACAACTGGAGATCATCTTTCCATCCTAAGGATCCAGTTCAAGCCAGCCAATTTGTTTCTGATGGTAAAACTCTCTACTGCCTGGAGGTTGCAAAGTATT ACAACCTACAAGACGAGGGTGACACTATTGACATGAGTGGCCATGTGGAGAAGATATCGTATTTGTAA
AA sequence Show only first row Show all	>Lus10035433 pacid=23170519 polypeptide=Lus10035433 locus=Lus10035433.g ID=Lus10035433.BGIv1.0 annot-version=v1.0 MESQFPFAFCNHIILHLRFLAIISLCFIPHQTQPFINQTPETIPGEIPPSVETLALQLDGYFSYHDTADAAKDFGNRFFFRPVAVLHPRSVSDIASTLNH VSKVGGLTVAARGRGHSLHGQAQAHGGVVIDMGSLPRRKSFIGEDDGGYYVEVSGGEMWIDVLKETLKDGLAPKSWTDYLHLTVGGTLSNGGISGQAFRH GPQINNVRQLEVVTGKGEVDTCSEKQNAELFFSVLGGLGQFGIVTRATVALEPAPDMVKWIRVLYSDFSKFSRDQEHLISLDESFDYVEGFVIINRTGIL NNWRSSFHPKDPVQASQFVSDGKTLYCLEVAKYYNLQDEGDTIDMSGHVEKISYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41510		ATCKX1, CKX1	cytokinin oxidase/dehydrogenas...		Lus10035433 [exp]	0	1
					Lus10033739 [exp]	2.2	0.8646
					Lus10011947 [exp]	3.9	0.8521
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10015285 [exp]	4.2	0.7963
AT2G20820			unknown protein		Lus10037883 [exp]	7.7	0.8434
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10003093 [exp]	8.2	0.7975
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10037295 [exp]	10.6	0.8028
AT2G31220	bHLH	bHLH010	basic helix-loop-helix (bHLH) ...		Lus10020478 [exp]	20.7	0.7554
AT2G01350		QPT	quinolinate phoshoribosyltrans...		Lus10024868 [exp]	27.7	0.8270
					Lus10032858 [exp]	33.4	0.8116
AT5G38710			Methylenetetrahydrofolate redu...		Lus10034095 [exp]	34.1	0.7870

Compare expression of checked genes

Lus10035433 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.