Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43080 363 / 2e-124 AT-P4H-1 P4H isoform 1 (.1) AT1G20270 194 / 1e-58 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G35810 189 / 1e-56 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G66060 186 / 2e-55 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT2G17720 178 / 2e-52 P4H5 prolyl 4-hydroxylase 5, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G28480 158 / 1e-44 Oxoglutarate/iron-dependent oxygenase (.1.2) AT3G57280 152 / 2e-43 Transmembrane proteins 14C (.1) AT3G06300 149 / 1e-41 P4H2, AT-P4H-2 prolyl 4-hydroxylase 2, P4H isoform 2 (.1) AT4G35820 149 / 1e-41 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G28490 148 / 4e-41 Oxoglutarate/iron-dependent oxygenase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031048 [exp] 402 / 2e-140 AT2G43080 406 / 7e-145 P4H isoform 1 (.1) Lus10031047 [exp] 244 / 2e-77 AT3G57280 132 / 6e-37 Transmembrane proteins 14C (.1) Lus10028404 [exp] 190 / 5e-57 AT5G66060 486 / 8e-176 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10041857 [exp] 190 / 5e-57 AT5G66060 488 / 2e-176 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10005620 [exp] 172 / 9e-50 AT1G20270 465 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10017249 [exp] 171 / 1e-48 AT1G20270 455 / 3e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10032183 [exp] 166 / 2e-47 AT3G28480 434 / 3e-154 Oxoglutarate/iron-dependent oxygenase (.1.2) Lus10012014 [exp] 162 / 3e-46 AT5G18900 448 / 2e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10016271 [exp] 162 / 4e-46 AT5G18900 444 / 2e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G232100 [exp] 357 / 7e-122 AT2G43080 456 / 4e-164 P4H isoform 1 (.1) Potri.005G108000 [exp] 186 / 2e-55 AT5G66060 405 / 1e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.005G245300 [exp] 178 / 2e-52 AT1G20270 483 / 3e-174 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.003G094300 [exp] 171 / 1e-50 AT3G57280 214 / 3e-70 Transmembrane proteins 14C (.1) Potri.001G139800 [exp] 170 / 4e-50 AT3G57280 172 / 5e-54 Transmembrane proteins 14C (.1) Potri.007G060800 [exp] 171 / 1e-49 AT5G66060 349 / 6e-121 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.008G197700 [exp] 169 / 5e-49 AT5G18900 448 / 3e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G075100 [exp] 158 / 2e-44 AT3G28480 436 / 3e-155 Oxoglutarate/iron-dependent oxygenase (.1.2) Potri.017G075300 [exp] 156 / 3e-44 AT3G28480 345 / 5e-120 Oxoglutarate/iron-dependent oxygenase (.1.2) Potri.002G016700 [exp] 127 / 3e-34 AT1G20270 229 / 5e-76 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [flax] [poplar] PF03647 [flax] [poplar] Tmemb_14 Transmembrane proteins 14C
Representative CDS sequence Show only first row Show all	>Lus10035434 pacid=23170487 polypeptide=Lus10035434 locus=Lus10035434.g ID=Lus10035434.BGIv1.0 annot-version=v1.0 ATGGCCGCAGCGATGAAGATCGTTTTCGGCCTCCTAACTTTCGTCACCGTCGGGATGATCATTGGAATTCCTGACTGGAACAATGATAAAGAAGCAGAGA GTCTGAGGATTGGACATGTCAAACCAGAAGTTATCAGCTGGTCACCAAGAATCATCGTATTGCACAACTTTTTGAGCACGGAGGAATGTGACTATCTTAG GGCCTTAGCTCGACCTCGCCTTCAGGTTTCAACTGTCGTGGATGCAAAAACTGGAAAGGGTATAAAGAGTAACGTGAGAACAAGCTCTGGAATGTTTCTA AGTTCGGCCGAGAGAAGGTATCCTTTGGTAAAGGCTATTGAGAAAAGGATTGCCGTGTATTCTCAAGTTCCTTCCGAGAATGGTGAGCTTATCCAAGTAC TAAGGTATGAGAAGGAACAGTTTTACAAACCTCATCATGACTACTTCTCTGACACTTTTAACATTCAACGTGGCGGCCAGCGAGTAGCAACAATGTTGAT GTACTTGAGCGACAATGTCGAGGGTGGAGAAACTTATTTCCCTCTGGCAGGATCAGGCCAGTGTACTTGCGGTGGGGAGGTAATGAAAGGCTTGTCCGTA AAGCCAGTTAAAGGAGACGCGGTTCTCTTTTGGAGCATGATCTCTCCACAAACCGACAACCTCCCAGCGACAATGGCCATGGCGGCGACGACGACGACGG CATCAACCACACTCTCGCAGCTCTCTTGCTTCTCCCCAATCAACCGCAACCTTCACCAGCTCCACCTCCTCCACCGTCGCCGGCTTTTCTCCTCCCCGTC CTCTCCTCCTCTCCCCAAGTTATCGATTGTTAGGAGCGTTGAACGGCCGGATAGGGAAGCTTCCAACCCGGATCCGTACATGGGGTACGAATCTGCATCC AAGTCGCTGCCGTACGGAGAAGAGAGTAATTTGGAAGAGAGCAAGAAGATTGATTACGGAAAAGATGGCGCCTATGGTTCAGCCATGATCCATGACTTCT GTTTCGGTATTCCGTTTGGGGCTCTTGTTCTAAGTGGAGGGCTCATTGGTCTATTGTTCTCAAGAAATATTACAACTTTTAGTGGGCTGCTAATTGGAGG CGGTTTACTGGCGCTTAGCTCTTACAGCTTGAAGATCTGGAGACAAGGGAAGTCCAGCTTACCATTCGTCTTCGGCCAAGCTGTGCTTTCGGCAGCTCTT CTGTGGAAGAACATCGAGGTCTATTCATTGACAAAGAGCCTCCTCCCAGCAGGGATTTACGCAGCAATTAGTGCTGCAATGCTGTGCTTCTACATTCATG TCATGATCTCCGGAGGAAACCCACCGCCGAAGAATTTGCACTCGTCTACTTCCAGGACATGA
AA sequence Show only first row Show all	>Lus10035434 pacid=23170487 polypeptide=Lus10035434 locus=Lus10035434.g ID=Lus10035434.BGIv1.0 annot-version=v1.0 MAAAMKIVFGLLTFVTVGMIIGIPDWNNDKEAESLRIGHVKPEVISWSPRIIVLHNFLSTEECDYLRALARPRLQVSTVVDAKTGKGIKSNVRTSSGMFL SSAERRYPLVKAIEKRIAVYSQVPSENGELIQVLRYEKEQFYKPHHDYFSDTFNIQRGGQRVATMLMYLSDNVEGGETYFPLAGSGQCTCGGEVMKGLSV KPVKGDAVLFWSMISPQTDNLPATMAMAATTTTASTTLSQLSCFSPINRNLHQLHLLHRRRLFSSPSSPPLPKLSIVRSVERPDREASNPDPYMGYESAS KSLPYGEESNLEESKKIDYGKDGAYGSAMIHDFCFGIPFGALVLSGGLIGLLFSRNITTFSGLLIGGGLLALSSYSLKIWRQGKSSLPFVFGQAVLSAAL LWKNIEVYSLTKSLLPAGIYAAISAAMLCFYIHVMISGGNPPPKNLHSSTSRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43080		AT-P4H-1	P4H isoform 1 (.1)		Lus10035434 [exp]	0	1
AT5G57500			Galactosyltransferase family p...		Lus10000407 [exp]	4.2	0.8716
AT1G24560			unknown protein		Lus10029143 [exp]	5.1	0.8389
AT2G41750			DTW domain-containing protein ...		Lus10012192 [exp]	6.2	0.8755
AT1G60200			splicing factor PWI domain-con...		Lus10030866 [exp]	12.3	0.8432
AT1G80190		PSF1	partner of SLD five 1 (.1)		Lus10025699 [exp]	14.0	0.8152
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Lus10028538 [exp]	14.9	0.8552
AT1G54320			LEM3 (ligand-effect modulator ...		Lus10001834 [exp]	20.8	0.8484
AT3G48340		CEP2	cysteine endopeptidase 2, Cyst...		Lus10033631 [exp]	23.2	0.8488
AT4G32160			Phox (PX) domain-containing pr...		Lus10001496 [exp]	25.3	0.8707
					Lus10029790 [exp]	26.5	0.8379

Compare expression of checked genes

Lus10035434 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.