Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10300 323 / 2e-110 Calcium-binding EF-hand family protein (.1.2.3.4.5) AT5G04170 308 / 6e-104 Calcium-binding EF-hand family protein (.1) AT2G27480 148 / 4e-43 Calcium-binding EF-hand family protein (.1) AT4G37010 44 / 5e-05 CEN2 centrin 2 (.1.2) AT3G50360 41 / 0.0004 CEN1, ATCEN2 CENTRIN 1, centrin2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042037 [exp] 330 / 1e-112 AT3G10300 350 / 1e-120 Calcium-binding EF-hand family protein (.1.2.3.4.5) Lus10018041 [exp] 315 / 2e-106 AT3G10300 338 / 9e-115 Calcium-binding EF-hand family protein (.1.2.3.4.5) Lus10031049 [exp] 305 / 1e-105 AT3G10300 289 / 2e-99 Calcium-binding EF-hand family protein (.1.2.3.4.5) Lus10043389 [exp] 194 / 3e-61 AT2G27480 238 / 1e-79 Calcium-binding EF-hand family protein (.1) Lus10019545 [exp] 190 / 1e-59 AT2G27480 232 / 3e-77 Calcium-binding EF-hand family protein (.1) Lus10019349 [exp] 42 / 0.0006 AT4G37000 289 / 4e-94 ARABIDOPSIS THALIANA RED CHLOROPHYLL CATABOLITE REDUCTASE, accelerated cell death 2 (ACD2) (.1) Lus10042370 [exp] 41 / 0.001 AT3G57530 820 / 0.0 calcium-dependent protein kinase 32 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G043600 [exp] 318 / 2e-108 AT3G10300 306 / 8e-104 Calcium-binding EF-hand family protein (.1.2.3.4.5) Potri.006G047300 [exp] 313 / 4e-107 AT3G10300 334 / 5e-115 Calcium-binding EF-hand family protein (.1.2.3.4.5) Potri.009G163600 [exp] 189 / 6e-59 AT2G27480 229 / 6e-76 Calcium-binding EF-hand family protein (.1) Potri.004G202200 [exp] 189 / 9e-59 AT2G27480 232 / 9e-77 Calcium-binding EF-hand family protein (.1) Potri.010G080900 [exp] 47 / 2e-06 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1) Potri.008G159300 [exp] 40 / 0.0005 AT3G22930 235 / 1e-80 calmodulin-like 11 (.1) Potri.005G138000 [exp] 40 / 0.001 AT3G50360 275 / 4e-96 CENTRIN 1, centrin2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10035435 pacid=23170542 polypeptide=Lus10035435 locus=Lus10035435.g ID=Lus10035435.BGIv1.0 annot-version=v1.0 ATGTCCGGTTACCCTTACCAGCCTCCCTCCGCCTACGGCTACGGCGGCCCATCACCTCCCCCACCCTACGGTGGCTCCTCCGGCCATTCACAGTCCCAAT CGCACGGCTCCTCCCCTCCACAGCCTCAATCGTATGGCTCCTCCGGCTATCCCCAGTCTCAATCGTACGGCTCCGCCCCTCCGCCGCACCAACCATATGG CTCCTCCGCTCCTTACGGCTCTTCTCCATCTCACCAGCACCAGCAGCCCCACGGCGCTCCTTCCGCCCCATACGCTGCTCCTTACGGAGCTCCGCCGCCT AAGGAGAAGCCACACCCGGCGTCGTCTGGTCATGGAGGAGGAACTGGATATCCGCCTTCCGCGTCATACGGAAGCCCCTTCGCTTCCCTGGTCCCTCCGG CTTCCCCTCCGGGGACCGATCCGAGCATCGTGGCGTGCTTCCAGATGGCCGATCAGGACGGGAGCGGGTTCATCGACGACAAGGAGCTCCAGAGGGCGCT CTCTAGCTACAATCAGAGCTTCAGCTTGAGGACCGTTCATTTGCTCATGTACCTCTTCACCAACACCAACACCAGGAGGATAGGACCAAAAGAATTCACT CAAGTGTTTTACAGTCTTCAGAGCTGGAGGGGCATTTTTGAGAGGTTCGATAGGGATAGGAGCGGGAAAATCGATGCCAACGAGCTGAAGGAGGCATTGT TGAGCCTTGGCTTTTCGGTCTCTCCTGTTGTTCTCCAGCTGTTGGTGTCCAAGTTCGACAAGACTGGTGGCAGGAATAATGCCATTGAATACGATAACTT CATCGAGTGCTGTCTTACTGTTAAGGGGCTGACGGAGAAGTTTAAAGAGAAGGACATGGCGTTCACGGGGTCAGCGACATTTAGTTACGAGACGTTCATG CTAACCGTTCTGCCGTTCCTTGTAGCATAA
AA sequence Show only first row Show all	>Lus10035435 pacid=23170542 polypeptide=Lus10035435 locus=Lus10035435.g ID=Lus10035435.BGIv1.0 annot-version=v1.0 MSGYPYQPPSAYGYGGPSPPPPYGGSSGHSQSQSHGSSPPQPQSYGSSGYPQSQSYGSAPPPHQPYGSSAPYGSSPSHQHQQPHGAPSAPYAAPYGAPPP KEKPHPASSGHGGGTGYPPSASYGSPFASLVPPASPPGTDPSIVACFQMADQDGSGFIDDKELQRALSSYNQSFSLRTVHLLMYLFTNTNTRRIGPKEFT QVFYSLQSWRGIFERFDRDRSGKIDANELKEALLSLGFSVSPVVLQLLVSKFDKTGGRNNAIEYDNFIECCLTVKGLTEKFKEKDMAFTGSATFSYETFM LTVLPFLVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10300			Calcium-binding EF-hand family...		Lus10035435 [exp]	0	1
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10020939 [exp]	1.4	0.8980
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10008795 [exp]	1.4	0.8961
AT3G62860			alpha/beta-Hydrolases superfam...		Lus10007877 [exp]	1.7	0.8867
AT4G21970			Protein of unknown function, D...		Lus10040067 [exp]	3.3	0.8466
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Lus10015632 [exp]	6.9	0.8430
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Lus10017258 [exp]	8.7	0.8860
AT4G19370			Protein of unknown function (D...		Lus10035672 [exp]	9.8	0.8575
AT3G27330			zinc finger (C3HC4-type RING f...		Lus10032118 [exp]	10.7	0.8586
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10028546 [exp]	11.5	0.8039
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10008714 [exp]	14.7	0.7934

Compare expression of checked genes

Lus10035435 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.