Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57300 1812 / 0 ATINO80 INO80 ortholog (.1.2) AT3G12810 212 / 4e-55 CHR13, SRCAP, PIE1 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) AT3G06400 176 / 2e-44 CHR11 chromatin-remodeling protein 11 (.1.2.3) AT5G66750 172 / 8e-44 CHR01, CHA1, SOM1, CHR1, SOM4, DDM1, ATDDM1 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) AT5G18620 171 / 6e-43 CHR17 chromatin remodeling factor17 (.1.2) AT2G44980 165 / 2e-41 ASG3 ALTERED SEED GERMINATION 3, SNF2 domain-containing protein / helicase domain-containing protein (.1.2) AT3G06010 164 / 1e-40 ATCHR12 Homeotic gene regulator (.1) AT2G13370 164 / 1e-40 CHR5 chromatin remodeling 5 (.1) AT2G25170 162 / 9e-40 CKH2, SSL2, GYM, CHD3, PKL, CHR6 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) AT5G19310 158 / 7e-39 Homeotic gene regulator (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031050 [exp] 2655 / 0 AT3G57300 2115 / 0.0 INO80 ortholog (.1.2) Lus10002974 [exp] 187 / 2e-47 AT3G12810 1071 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10041735 [exp] 178 / 2e-45 AT5G66750 1069 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10024019 [exp] 175 / 1e-44 AT5G66750 1034 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10005339 [exp] 166 / 3e-41 AT2G25170 1787 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Lus10033967 [exp] 164 / 2e-40 AT5G18620 1650 / 0.0 chromatin remodeling factor17 (.1.2) Lus10034064 [exp] 164 / 2e-40 AT3G06010 1422 / 0.0 Homeotic gene regulator (.1) Lus10041019 [exp] 163 / 3e-40 AT2G25170 1776 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Lus10010522 [exp] 162 / 4e-40 AT3G06010 1358 / 0.0 Homeotic gene regulator (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G043500 [exp] 2124 / 0 AT3G57300 2157 / 0.0 INO80 ortholog (.1.2) Potri.006G047100 [exp] 2064 / 0 AT3G57300 2135 / 0.0 INO80 ortholog (.1.2) Potri.001G207700 [exp] 209 / 4e-54 AT3G12810 2199 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.003G022100 [exp] 207 / 9e-54 AT3G12810 1824 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.019G129900 [exp] 182 / 4e-47 AT5G66750 1047 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.007G026700 [exp] 174 / 1e-44 AT5G66750 993 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.008G205600 [exp] 174 / 1e-43 AT3G06400 1724 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.010G021400 [exp] 172 / 2e-43 AT3G06400 1748 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.010G091200 [exp] 172 / 4e-43 AT3G06010 1408 / 0.0 Homeotic gene regulator (.1) Potri.008G149900 [exp] 170 / 2e-42 AT3G06010 1485 / 0.0 Homeotic gene regulator (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00176 [flax] [poplar] SNF2_N SNF2 family N-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10035436 pacid=23170502 polypeptide=Lus10035436 locus=Lus10035436.g ID=Lus10035436.BGIv1.0 annot-version=v1.0 ATGGATCGCAGGAGAGAAGCTAACGACTCGCTTTCTTACTCCAACCTCTTCAACCTCGAGTCTTTGATGAACTTCAAAGTCCCACAACCAGATGATGAAT TTGATTATTATGGGAATAGTAGTCAGGATGAGAGCAGAGGTAGCCAAGGTAGAGCAATAACAAAATATGGCAATGGTAGTGTGACAGAGAAGGATCCAAG TTCAGGGAAGAGAAGGAAGCTGGCTGTGGACAGTGACGGTGAGGAGGAAGATAGGTCTTACGGGGCTGGTATCACCGAGGAACGATACAGATCGATGTTG GGAGAGCACATTAAGAAGTACAAGAGGAGGTTTAAAGACTCTCCTAGTCCTGCACCTACTCCTTCTCGAACCGGAGCCATTCCCAAGAATGGTTTAGGAA GTTCGAAAACTAGGAAACTGGGAAACGAGCAGCAAGGTGTACATGATATGGATGTCACATCCGAATGGCAGAATGATGCCACAATCCTTAAGCGTGGGGA CCGCGCTCGAGATCTTACTTCCAAAATCTTTTACGAGCCTGCTTATCTAGATATTGGGGAGGGTATAACTTATAGGATCCCTCCTTCTTATGACAAGGTG GCTGCATCCTTGAATTTGCCTAGCTTATCAGATATCCGGGTAGATGAAGTTTACTTGAAAGGTACACTTGATTTGGGGTCTTTGGCGCAAATGATGGCCA ATGATAAAAGATTTGGTTCTAAGAGCCAAGCAGGAATGGGCGATCCTCACCCCCAGTATGAATCTCTTCAAGGGAGGTTGAAGGCATTGGCAGCATCTAG TTCCATACCAAAGTTTAGTCTTAAGATATCTGAGGATGCTTTGAAGTCTGCCATTCCCGAGGGGGCAGCTGGAAATATAGCACGCTCCATTTTGTCAGAT GGGGGTGTGTTGCAGGTTTATTATGTAAAAGTCTTAGAGAAAGGAGACACTTATGAGATTATTGAACGAAGTTTGCCAAAGAAACTAAAGTTGAAAAAAG ATCCCTCTGTGATTGAGAGAGAGGAAATGGAGAGGATTGGTAAGGTTTGGGTCAACATTGTAAGAAGAGACATACCCAAGCATCATAGGATATTCACTAC TTTTCATCGTAAACAATTAATAGATGCGAAGAGGTTTTCAGAAAACTGTCAAAGAGAGGTGAAGTTGAAGGTTAGCAGGTCACTCAAACTCATGCGGACT GCTGCCCTACGAACTAGGAAGTTGTCCAGAGATATGCTGCTATTTTGGAAACGAGTAGATAAGGAGATGGCAGAGGTAAGGAAAAAGGAGGAAAAAGAAG CTGCAGAAACTTTAAAGCGTGAGCAGGAGCTCCGGGAAGCAAAGAGGCAGCAGCAACGCCTTAATTTCCTCATACAACAAACCGAGCTTTACAGACATTT CATGCAGGACAAGCAAAGTTCACAACCTTCTGAACCCTTGCCTTTGGAAGATGAGAAACTGGATGCTGAACAAATGGGATTAACCTCTTCCGAAGTTCAA CCTGGTGAAGAATCTCGAGAGGATGCTGAGCTGAGAAAGGAAGCTCTGAAGGCTGCTCAAGATGCAGTTTTTAAGCAGAGAAAGTTGACAAGTGCTTTTG ATACTGAATGTTCACGGTTGCGGGAGTCAGCTGATACTGAAGGTTTAAATGGTATACTAGCAGACGAGATGGGCCTGGGAAAGACTATTCAAGCAATGGC ATTCTTAGCTCACCTCGCTGAGGAGAAAAATATATGGGGTCCCTTTTTGGTCGTTGCACCAGCTTCCGTCTTGAATAACTGGGCTGATGAAATTAGTCGT TTTTGCCCTGAGTTGAAAACCTTACCTTACTGGGGAGGCCTCCAGGAGCGTACTATACTTAGGAAGAACATTAATCCCAAGCGTCTTTATCGAAGAGATG CTGGGTTTCATATTCTCATTACAAGCTATCAATTACTTGTGCTGGATGAGAAGTATTTCCGTCGTGTGAAGTGGCAGTACATGGTACTAGATGAAGCGCA GGCTATTAAAAGTTCCACCAGTCACGAACAGTTCAACGAGTGGTTTTCAAAAGGGATCGAGAATCATGCAGAACACGGGGTTACTGTAAATGAACACCAG CTTAACAGATTGCATGCAATTTTAAAGCCCTTTATGCTACGTAGACTTAAAGCGGATGTGACTCAAGAGCTCACTAGGAAAACAGAGGTTACAGTTCACT GTAAGTTGAGCTCGCGACAGCAGGCCTTTTATCAAGCTATCAAGAATAAGATATCTCTTGCGGAGTTGTTTGATGGCTCTCGGGGATATATTAACGAGAA GAAACTTATGAACTTGATGAATATAGTGATTCAGCTCCGGAAAGTATGTAACCATCCAGAACTGTTTGAGAGGAATGAGGGAAGTTCGTATCTCTATTTT GGACAGCTTCCAAATACTCTTCTACCTCCTCCATTTGGGGAGTTGGATGATATACACTATCCAGGTGGCCAGAATCCTATTACGTATAAGATACCAAAGC TGATCAATGACGAGACTGGCCAAAGTTCCAGGGTGCTCCTCTCGAGAGCTGCTCCTGGTTTTTACAGAGAATTATTTCTGAAAAAATTTAATATTTTCTC CCCCGAAAATGTTCAAGCTTCTTTACCCGCAGAGACGAACAATTTGCCTGGATTGTTTTCCAGGAGTGGGGCATTTGGCTTTACCCGTCTGATGGACTTG TCCCCCTCTGAAGTTGCTTTTCTCGCAGCTGGCTCGCTTATGGAGAAACTGTTGTTTTCTATGATAAGATGGGATCGTCAGTTTCTAGATGGAATCCTCA ATGACATTGTAGAAGAGGTGGATGCCAACCCGCTTTGCACCCAGCTTGAAGCAGGAAAAGTAAGGGCCGTTTCACGGATGTTACTAATGCCATCCAGATC TCAGACTAGTGTACTAAGAAGGAAACTTGCAACTGGCCCTACTGATGCTCCATTTGAGGCTTTGATAGTCTCTCATCAAGACAGGCTTTTGTCGAATATT GGAGTCCTTCATTCGACATACACTTTCATCCCAAAAAGTCGAGCTCCACCGATTTCAGTCCAATGCTCAGATAGGAATTTCTCTTACAAGATGACTGAAG AACTGCATCAGCCTTGGCTGAAGAGGTTATTGATTGGGTTTGCGCGGACATCTGAACTTAACGGTCCCAGAAAACCAACAGGACCACATCCCTTAATAGA AGAGATTGATTCTGAAGTGCCAGTTTCTCAACCTGCCCTTCAAGTAATACACGGGATTTTTGGGTCGTACCCCCCAATGCAGAGCTTTGATCCAGCGAAG CTACTTACGGATTCTGGGAAGCTGCAGACCCTTGATATATTATTGAAACGCTTGCGTGCAGAGAACCATCGAGTTTTATTGTTTGCACAAATGACGAAAA TGTTGAATATTCTTGAGGACTACATGAACTATAGAAAGTATAGATATCTAAGACTTGATGGGTCATCCACCATTATGGACCGCCGAGACATGGTCAAAGA CTTCCAGGACAGGAATGATATTTTCGTGTTCCTTTTGAGTACCAGAGCTGGTGGAGTGGGTATAAATTTGACAGCTGCAGACACAGTTATCTTCTATGAA AATGATTGGAATCCCACGTTAGATTTGCAGGCAATGGACAGAGCCCATCGGTTGGGTCAGACAAAAGATGTGACTGTCTACCGTCTCATCTGTAAAGAGA CGATTGAGGAGAAGATACTGCATCGGGCTAGCCAGAAGAACACAGTCCAGCAACTTGTCATGACTGGTGGCCATGTACAGGGTGATCTCTTAGCTCCTGA AGATGTTGTGTCATTGCTTCTTGATGATCCACAACTGGAGCAGAAACTAAAAGAAGTTCCGCTGCAGATGAAAGATAATAAACAAAAGAAGAAACCTACA AGGGCCATCGTGATTGATGCTGAAGGTGACGCAACTCTTGAAGATTTGACTGAACTTGCGGCCCAGAATGCAGCAGCAACCGAGCCTTCTCAAGATGCTG ATAAATCTAAACCAAGTAGCAAAAAGAGGAAAGCTGCGACCGATAAGCCGACTCAATCAAGGCCAAGGAACTCAGCAAGGGTGACAGAGGCAGGTTCCGT ATCCATTGATAATGACACAGATGGTGGTGTATCCAGTTCCGACCCACTATCAGAGAGAGGCAAGAGGCCCAAGAGACCCAAGAAGAGCGTAAACGAAGCC CTTGAGCCGGCATATGTTGCTTCTCCTAGAGTTGATTCAGCGGCACATACTCAATAA
AA sequence Show only first row Show all	>Lus10035436 pacid=23170502 polypeptide=Lus10035436 locus=Lus10035436.g ID=Lus10035436.BGIv1.0 annot-version=v1.0 MDRRREANDSLSYSNLFNLESLMNFKVPQPDDEFDYYGNSSQDESRGSQGRAITKYGNGSVTEKDPSSGKRRKLAVDSDGEEEDRSYGAGITEERYRSML GEHIKKYKRRFKDSPSPAPTPSRTGAIPKNGLGSSKTRKLGNEQQGVHDMDVTSEWQNDATILKRGDRARDLTSKIFYEPAYLDIGEGITYRIPPSYDKV AASLNLPSLSDIRVDEVYLKGTLDLGSLAQMMANDKRFGSKSQAGMGDPHPQYESLQGRLKALAASSSIPKFSLKISEDALKSAIPEGAAGNIARSILSD GGVLQVYYVKVLEKGDTYEIIERSLPKKLKLKKDPSVIEREEMERIGKVWVNIVRRDIPKHHRIFTTFHRKQLIDAKRFSENCQREVKLKVSRSLKLMRT AALRTRKLSRDMLLFWKRVDKEMAEVRKKEEKEAAETLKREQELREAKRQQQRLNFLIQQTELYRHFMQDKQSSQPSEPLPLEDEKLDAEQMGLTSSEVQ PGEESREDAELRKEALKAAQDAVFKQRKLTSAFDTECSRLRESADTEGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISR FCPELKTLPYWGGLQERTILRKNINPKRLYRRDAGFHILITSYQLLVLDEKYFRRVKWQYMVLDEAQAIKSSTSHEQFNEWFSKGIENHAEHGVTVNEHQ LNRLHAILKPFMLRRLKADVTQELTRKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDGSRGYINEKKLMNLMNIVIQLRKVCNHPELFERNEGSSYLYF GQLPNTLLPPPFGELDDIHYPGGQNPITYKIPKLINDETGQSSRVLLSRAAPGFYRELFLKKFNIFSPENVQASLPAETNNLPGLFSRSGAFGFTRLMDL SPSEVAFLAAGSLMEKLLFSMIRWDRQFLDGILNDIVEEVDANPLCTQLEAGKVRAVSRMLLMPSRSQTSVLRRKLATGPTDAPFEALIVSHQDRLLSNI GVLHSTYTFIPKSRAPPISVQCSDRNFSYKMTEELHQPWLKRLLIGFARTSELNGPRKPTGPHPLIEEIDSEVPVSQPALQVIHGIFGSYPPMQSFDPAK LLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVKDFQDRNDIFVFLLSTRAGGVGINLTAADTVIFYE NDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETIEEKILHRASQKNTVQQLVMTGGHVQGDLLAPEDVVSLLLDDPQLEQKLKEVPLQMKDNKQKKKPT RAIVIDAEGDATLEDLTELAAQNAAATEPSQDADKSKPSSKKRKAATDKPTQSRPRNSARVTEAGSVSIDNDTDGGVSSSDPLSERGKRPKRPKKSVNEA LEPAYVASPRVDSAAHTQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57300		ATINO80	INO80 ortholog (.1.2)		Lus10035436 [exp]	0	1
AT3G57300		ATINO80	INO80 ortholog (.1.2)		Lus10031050 [exp]	1.0	0.9658
AT4G15840			BTB/POZ domain-containing prot...		Lus10037522 [exp]	4.5	0.9225
AT1G27430			GYF domain-containing protein ...		Lus10003139 [exp]	9.2	0.9377
AT5G10470		KAC1, KCA1	KINESIN CDKA;1 ASSOCIATED 1, k...		Lus10025721 [exp]	11.7	0.8841
AT4G02260		AT-RSH1, RSH1, ...	RELA-SPOT HOMOLOG 1, RELA/SPOT...		Lus10003599 [exp]	11.8	0.9074
AT1G02080			transcription regulators (.1.2...		Lus10024660 [exp]	13.6	0.9303
AT5G04560		DME1, DME	DEMETER, HhH-GPD base excision...		Lus10023864 [exp]	14.7	0.9191
AT3G62010			unknown protein		Lus10009251 [exp]	15.4	0.8722
AT4G35800		RNA_POL_II_LSRN...	RNA polymerase II large subuni...		Lus10028403 [exp]	16.1	0.9176
AT3G61690			nucleotidyltransferases (.1)		Lus10004019 [exp]	16.2	0.9123

Compare expression of checked genes

Lus10035436 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.