Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41540 800 / 0 GPDHC1 6-phosphogluconate dehydrogenase family protein (.1.2.3) AT3G07690 754 / 0 6-phosphogluconate dehydrogenase family protein (.1) AT5G40610 71 / 6e-13 NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031052 [exp] 956 / 0 AT2G41540 803 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2.3) Lus10016364 [exp] 762 / 0 AT3G07690 766 / 0.0 6-phosphogluconate dehydrogenase family protein (.1) Lus10019761 [exp] 744 / 0 AT3G07690 744 / 0.0 6-phosphogluconate dehydrogenase family protein (.1) Lus10022308 [exp] 64 / 8e-11 AT5G40610 607 / 0.0 NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1) Lus10014889 [exp] 64 / 1e-10 AT5G40610 609 / 0.0 NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G043400 [exp] 832 / 0 AT2G41540 815 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2.3) Potri.006G046900 [exp] 831 / 0 AT2G41540 820 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2.3) Potri.003G203800 [exp] 788 / 0 AT3G07690 768 / 0.0 6-phosphogluconate dehydrogenase family protein (.1) Potri.017G070900 [exp] 77 / 5e-15 AT5G40610 613 / 0.0 NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0106 [flax] [poplar] 6PGD_C PF07479 [flax] [poplar] NAD_Gly3P_dh_C NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CL0063 [flax] [poplar] NADP_Rossmann PF01210 [flax] [poplar] NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
Representative CDS sequence Show only first row Show all	>Lus10035438 pacid=23170632 polypeptide=Lus10035438 locus=Lus10035438.g ID=Lus10035438.BGIv1.0 annot-version=v1.0 ATGGTGGGAAGCATTGAAACAAACACTAACCACAACGGCTGGTCCTCAACAATCCACACCACAATGGCCAGCGCCGGCCAGGAAGAAAAACTCGACGAGC TCCGACGCGTGATGGGGAAATCCGACGGCGACCCGCTCCGGATTGTCGGAGTTGGCGCCGGCGCGTGGGGGAGCGTGTTCGCAGCCTTGCTCCAAGACAG CTACGGCCAGTTCCGGGACAAGATCCAGATCCGGATATGGCGAAGACCGGGAAGATCCGTGGACAGAGCCACCGCCGAGCACCTATTCGAAGTGATCAAC TCCAGGGAAGAAGTGCTCCGGCGGCTGATACGGCGGTGCGCGTACTTGAAATACGTGGAGGCGAGGCTAGGTGATCGGACCCTGTACGCCGATGAGATCC TGAAAGACGGGTTCTGCCTGAACATGGTGGACACGCCGCTGTGTCCGATGAAGGTGGTGACAAACTTGCAAGAAGCCGTGTGGGACGCGGATATTGTGGT GAACGGAGTTCCGTCGACGGACACGAAGGAGGTCTTCGAGGAGATCAGTCTGTATTGGAAGGAGAGGATTAGTATGCCGATTATCGTGTCGCTGGCCAAA GGTATCGAGGCGGCTCTTTCGCCGGTGCCGCATATTATTACTCCGACTCAGATGATCAGACTCGCAACGGGAGTGCCAATGGAGAACATACTGTATTTGG GTGGACCGAACATTGCATCGGAGATACACAACAAGGAGTACGCAAATGCTCGAATCTGCGGAGCCGAGAAGTGGAGGAAGCCGCTTGCTAATTTCTTGAG GCAGCCACATTTCATCGTCTGGGATAACAGTGACCTCGTCACCCATGAGGTCATGGGTGGACTCAAGAACGTTTACGCCATTGGAGCAGGGATGGTAGCA GCACTTACAAAGGAGAGTGCAACAAGCAAGTCGGTGTACTTTGCACATTGTACATCGGAAATGATATTCATCACTCATCTGCTTGCGGAAGAGCCAGAGA AGCTTGCAGGGCCATTGCTAGCTGATACTTACGTGACCTTGCTCAAAGGTCGAAACGCTTGGTACGGCCAAATGTTAGCCAAGGGAGAGCTTAGCCGTGA CATGGGTGATAGCATCAGTGGCAAAGGAATGATCCAGGGTGTGTCTGCAGTGAGGGCATTCTATGAGCTACTTAGTCAGCCAAGCCTGAGTGTACTGCAT CCTAATGAGAAAAAGGCAGTGGCACCTGTTGAATTGTGCCCAATCCTCAAAACTCTCTACACCATCCTTATTACAAGGGAAAAGTCGTCGCAAGCTATTT TGCAGGCGCTGAGAGACGAGACGCTGAACGACCCGAGGGAAAGGATTGAGATTGCTCAAACTCATGCTTTCTACAGGCCTTCTCTCCTTGGACAGCCTTA A
AA sequence Show only first row Show all	>Lus10035438 pacid=23170632 polypeptide=Lus10035438 locus=Lus10035438.g ID=Lus10035438.BGIv1.0 annot-version=v1.0 MVGSIETNTNHNGWSSTIHTTMASAGQEEKLDELRRVMGKSDGDPLRIVGVGAGAWGSVFAALLQDSYGQFRDKIQIRIWRRPGRSVDRATAEHLFEVIN SREEVLRRLIRRCAYLKYVEARLGDRTLYADEILKDGFCLNMVDTPLCPMKVVTNLQEAVWDADIVVNGVPSTDTKEVFEEISLYWKERISMPIIVSLAK GIEAALSPVPHIITPTQMIRLATGVPMENILYLGGPNIASEIHNKEYANARICGAEKWRKPLANFLRQPHFIVWDNSDLVTHEVMGGLKNVYAIGAGMVA ALTKESATSKSVYFAHCTSEMIFITHLLAEEPEKLAGPLLADTYVTLLKGRNAWYGQMLAKGELSRDMGDSISGKGMIQGVSAVRAFYELLSQPSLSVLH PNEKKAVAPVELCPILKTLYTILITREKSSQAILQALRDETLNDPRERIEIAQTHAFYRPSLLGQP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41540		GPDHC1	6-phosphogluconate dehydrogena...		Lus10035438 [exp]	0	1
AT2G41540		GPDHC1	6-phosphogluconate dehydrogena...		Lus10031052 [exp]	2.0	0.8389
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10039401 [exp]	2.0	0.8322
AT1G67730		ATKCR1, YBR159,...	beta-ketoacyl reductase 1 (.1)		Lus10036940 [exp]	2.4	0.8238
AT5G43210			Excinuclease ABC, C subunit, N...		Lus10016370 [exp]	15.1	0.8291
AT5G05190			Protein of unknown function (D...		Lus10030508 [exp]	17.1	0.7250
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10006637 [exp]	20.4	0.7553
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10040021 [exp]	22.0	0.7947
AT5G20270		HHP1	heptahelical transmembrane pro...		Lus10038120 [exp]	28.5	0.7637
AT4G20040			Pectin lyase-like superfamily ...		Lus10001376 [exp]	29.7	0.7744
AT1G69870		NRT1.7	nitrate transporter 1.7 (.1)		Lus10037221 [exp]	37.5	0.8185

Compare expression of checked genes

Lus10035438 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.