Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41560 1461 / 0 ACA4 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) AT3G57330 1456 / 0 ACA11 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) AT4G37640 1240 / 0 ACA2 calcium ATPase 2 (.1) AT2G22950 1229 / 0 ACA7 auto-regulated Ca2+-ATPase 7, Cation transporter/ E1-E2 ATPase family protein (.1) AT1G27770 1216 / 0 PEA1, ACA1 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) AT4G29900 873 / 0 CIF1, ATACA10, ACA10 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) AT5G57110 870 / 0 AT-ACA8, ACA8 "AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8", "autoinhibited Ca2+ -ATPase, isoform 8", autoinhibited Ca2+ -ATPase, isoform 8 (.1), autoinhibited Ca2+ -ATPase, isoform 8 (.2) AT3G21180 836 / 0 ATACA9, ACA9 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) AT3G63380 746 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G22910 704 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031053 [exp] 1921 / 0 AT2G41560 1480 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10042040 [exp] 1826 / 0 AT3G57330 1542 / 0.0 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) Lus10016366 [exp] 1423 / 0 AT2G41560 1463 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10018687 [exp] 1213 / 0 AT1G27770 1667 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) Lus10011522 [exp] 1209 / 0 AT4G37640 1704 / 0.0 calcium ATPase 2 (.1) Lus10025199 [exp] 1160 / 0 AT4G37640 1591 / 0.0 calcium ATPase 2 (.1) Lus10019300 [exp] 1134 / 0 AT4G37640 1628 / 0.0 calcium ATPase 2 (.1) Lus10007736 [exp] 1128 / 0 AT1G27770 1528 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) Lus10018045 [exp] 1009 / 0 AT3G57330 816 / 0.0 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G043100 [exp] 1592 / 0 AT2G41560 1538 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Potri.006G046500 [exp] 1575 / 0 AT3G57330 1451 / 0.0 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) Potri.001G020600 [exp] 1472 / 0 AT2G41560 1455 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Potri.003G204000 [exp] 1385 / 0 AT2G41560 1398 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Potri.007G055500 [exp] 1218 / 0 AT4G37640 1721 / 0.0 calcium ATPase 2 (.1) Potri.014G016600 [exp] 1218 / 0 AT1G27770 1686 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) Potri.018G139800 [exp] 855 / 0 AT4G29900 1566 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Potri.006G072900 [exp] 855 / 0 AT4G29900 1549 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Potri.010G250800 [exp] 845 / 0 AT3G21180 1575 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) Potri.008G008100 [exp] 837 / 0 AT3G21180 1562 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00689 [flax] [poplar] Cation_ATPase_C Cation transporting ATPase, C-terminus PF12515 [flax] [poplar] CaATP_NAI Ca2+-ATPase N terminal autoinhibitory domain CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase CL0137 [flax] [poplar] PF00690 [flax] [poplar] Cation_ATPase_N Cation transporter/ATPase, N-terminus CL0137 [flax] [poplar] PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase
Representative CDS sequence Show only first row Show all	>Lus10035439 pacid=23170627 polypeptide=Lus10035439 locus=Lus10035439.g ID=Lus10035439.BGIv1.0 annot-version=v1.0 ATGGAAAACTATCTCAAGGAGTTCGAGCTCGACCATAAGAACCCCTCCGAGGAGGCCTTGATGCGGTGGAGGCGAGCCGTCACCATCATCAAGAACCCCC GCCGTCGGTTCCGCCACGTCGCCGATCTCGCCAAGCGTTCAGAAACCGAGCGCAAGAAGCGCAGCATCCAGGAAAAGATAAGAGTCGCTCTCTATGTAAA AAAGGCAGCCTTGCAGTTCATTGATGCTGCTGCTGCCCACGATGTTTCAACTGGTAACCAAGCCGAGAACAAGGTATCAGAAGAGGTTAAAAAGGCTGGT TTTGGAATTGAAGCGGATGAACTTGCTTCAATTGTTCGGGACCATGACCTCAAGGCCCTGAAATTCAATGGTGAGGTGGAAGGTATTGCAAGGAAGGTTG GTGTTTCTGTCAATGAAGGTGTTCATAAGAACAACGTATCTGTTAGACAAAGCATATATGGAAGCAATTGTTACACAGAGAAGCCTCCCAAAAGTTTTTT CTCGTTTGTGTGGGAGGCACTGCAGGACTTGACTTTGATTATCCTTATTGTTTGTGCCGTCATGTCAATCGGAGTAGGGCTCGCTACTGAAGGGTGGCCA AAAGGAATGTATGATGGGTTGGGAATTATACTCAGTATTCTCTTGGTAGTCATGGTCACTGCTATTAGTGACTACAAGCAGTCCTTACAGTTCCGCGATT TGGATAAGGAGAAGAAGAAGATCTCGATCCAGGTCACTAGGGAAGGGCGAAAACAGGAAGTTTCCATATTCGACTTGGTTGTGGGAGACATTGTTCAGCT ATCAATTGGAGATGTTGTGCCAGCAGATGGAGTTTTTATATCTGGATATAGCTTAGTAATTGATGAGTCGAGCTTGTCAGGCGAGAGTGAGCCTGTTAAT ATAGACAAGTCGAAACCATTTCTTCTCTCAGGAACCAAAGTCCAAGATGGATCAGGAAACATGCTAGTTACAGCTGTTGGGATGAGAACTGAATGGGGCA AGTTGATGGAAACTTTGAATGAGGGTGGAGAAGATGAGACACCACTGCAGGTAAAATTGAATGGTGTAGCAACAATCATTGGGAAGATAGGTCTGGGTTT TGCTGTGCTGACATTTCTGGTCTTGACTGTGAGGTTTTTCTGGACGAAAATATCCAATAATGAGCTCACAGAATGGTCTTCTGCTGATGCTTTGACGCTT CTGGACTATTTTGCTATCGCTGTAACCATAATCGTCGTTGCTGTTCCTGAAGGATTGCCTCTGGCAGTTACTCTAAGTCTTGCATTTGCAATGAAGAAAC TAATGGATGAGAAGGCTCTTGTTAGGCATTTGTCTGCTTGTGAGACAATGGGTTCTGCTAGTTGCATCTGCACAGACAAAACTGGGACTTTAACAACGAA CCACATGGTAGTTGATAAGATATGCATCAGTGGGAAGATCAAGAGTGTAGTCCACGACAAAAGTCAAGGTATTTCTGGAATTGAAGCTTCTGAAACAGTC TTGAGCCTTCTTCAGCAAGCTATATTCCAGAATACGGGTTGTGACATGACCAAAGACGAAGATGGAAAGGCCAAGATTCTGGGAACCCCTACCGATAAGG CATTGTTTGAATTAGGCTTGCATTTGGGTGCGGACTTGGAAGTGCAACATAAAGAATGTAATATACTGAAAGTTGAACCGTTTAATTCAGTTAAGAAGAA GATGTCTTCACTTGTAGCTCTTCCTGAAGGTGGCTTGCGAGCTTTCTGTAAGGGTGCATCTGAGATAGTGCTAAGAATGTGCGATAAAGTTGTGGAGGAT AATGGAGAAGTAGCCGATCTGACTGAGGAGCAGGTGAAAAGTATATCAGACATCATAAATGAGTTTGCTTCTGACGCATTGAGAACACTCTGCTTGGCAT ATAAAGACGTAGATGGCAGATCCGATGAAACTGGCATCCCAGATTTTGGCTACACATTGGTGGCCGGTGTTGGAATCAAAGATCCGGTTCGCCCTGGAGT CAGGGAAGCAGTTCAGACCTGCTTAGCTGCTGGAATAACTGTTCGTATGGTTACTGGTGATAATATAAATACTGCTAGAGCCATAGCCAAAGAATGTGGG ATACTTACTGAAGGCGGTGTGGCCATAGAAGGTCCCGATTTCCGGAGCAAGACTCCTGACGAAATGAGAGCCATCATACCAAAGATCCAGGTGATGGCTA GATCCTTGCCTTTGGACAAACATACCCTTGTCACAAATTTGAAGAACATGTTTGGAGAAGTTGTGGCAGTTACTGGTGATGGTACTAACGACGCTCCAGC ATTGCACGAGGCCGACATCGGTCTGGCTATGGGAATAGCTGGAACAGAGGTTGCTAAAGAGAATGCTGATATCATTATAATGGACGACAACTTTAAGTCT ATTGTAAACGTTGCAAGATGGGGTCGTGCTGTGTACATCAACATCCAGAAGTTCGTACAGTTCCAGCTCACTGTTAACATCGTTGCGCTGGTGCTCAACT TCATCTCTGCATGCATATCAGGATCTGCACCACTAACGGCTGTACAGCTGCTTTGGGTCAACATGATCATGGACACTCTGGGTGCATTGGCACTGGCCAC CGAACCTCCAAATGATGCTCTGATGGCGAGACCCCCCGTAGGGAGGGGTGCTAGCTTCATCACCAAAACAATGTGGAGGAACATCTTTGGGCAGAGTATA TACCAACTGGCTGTGCTTGCAGTTTTGAATTTCGGCGGGAAGCAGCTACTCGGACTTGAAGGTCCAGATGCTACAATCACTCTCAACACCTTGATATTCA ACTCTTTCGTCTTCTGCCAGGTGTTCAACGAAATTAACAGCCGAGAAATCGAGAAGATAAACGTGTTGAAGGGTATGTTCAGTAGCTGGGTGTTCATAGG CGTAATGACAGCTACGGTAGTGTTCCAAGTGATCATTGTTGAGCTACTCGGAACATTTGCGAGCACTGTCCCACTCAGCTGGGAACTCTGGCTTCTGAGT ATATTGTTGGGAGCAGGTAGCTTGATCGTTGCTGTGATACTGAAATGCATCCCCGTTGGAGTCGATCTACCACCATCATCGAAGAAGCAACACGACGGTT ATGATCAACTTCCCAGCGGTCCGGACTTGGCTTGA
AA sequence Show only first row Show all	>Lus10035439 pacid=23170627 polypeptide=Lus10035439 locus=Lus10035439.g ID=Lus10035439.BGIv1.0 annot-version=v1.0 MENYLKEFELDHKNPSEEALMRWRRAVTIIKNPRRRFRHVADLAKRSETERKKRSIQEKIRVALYVKKAALQFIDAAAAHDVSTGNQAENKVSEEVKKAG FGIEADELASIVRDHDLKALKFNGEVEGIARKVGVSVNEGVHKNNVSVRQSIYGSNCYTEKPPKSFFSFVWEALQDLTLIILIVCAVMSIGVGLATEGWP KGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDKEKKKISIQVTREGRKQEVSIFDLVVGDIVQLSIGDVVPADGVFISGYSLVIDESSLSGESEPVN IDKSKPFLLSGTKVQDGSGNMLVTAVGMRTEWGKLMETLNEGGEDETPLQVKLNGVATIIGKIGLGFAVLTFLVLTVRFFWTKISNNELTEWSSADALTL LDYFAIAVTIIVVAVPEGLPLAVTLSLAFAMKKLMDEKALVRHLSACETMGSASCICTDKTGTLTTNHMVVDKICISGKIKSVVHDKSQGISGIEASETV LSLLQQAIFQNTGCDMTKDEDGKAKILGTPTDKALFELGLHLGADLEVQHKECNILKVEPFNSVKKKMSSLVALPEGGLRAFCKGASEIVLRMCDKVVED NGEVADLTEEQVKSISDIINEFASDALRTLCLAYKDVDGRSDETGIPDFGYTLVAGVGIKDPVRPGVREAVQTCLAAGITVRMVTGDNINTARAIAKECG ILTEGGVAIEGPDFRSKTPDEMRAIIPKIQVMARSLPLDKHTLVTNLKNMFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKENADIIIMDDNFKS IVNVARWGRAVYINIQKFVQFQLTVNIVALVLNFISACISGSAPLTAVQLLWVNMIMDTLGALALATEPPNDALMARPPVGRGASFITKTMWRNIFGQSI YQLAVLAVLNFGGKQLLGLEGPDATITLNTLIFNSFVFCQVFNEINSREIEKINVLKGMFSSWVFIGVMTATVVFQVIIVELLGTFASTVPLSWELWLLS ILLGAGSLIVAVILKCIPVGVDLPPSSKKQHDGYDQLPSGPDLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41560		ACA4	"autoinhibited Ca\(2+\)-ATPase...		Lus10035439 [exp]	0	1
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Lus10022767 [exp]	2.0	0.8768
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Lus10011834 [exp]	4.2	0.8660
AT3G62720		ATXT1, XXT1	XYG XYLOSYLTRANSFERASE 1, xylo...		Lus10037521 [exp]	7.3	0.8494
AT2G41560		ACA4	"autoinhibited Ca\(2+\)-ATPase...		Lus10031053 [exp]	8.5	0.8092
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Lus10039649 [exp]	10.5	0.8209
AT2G15620		ATHNIR, NIR1	ARABIDOPSIS THALIANA NITRITE R...		Lus10014059 [exp]	11.6	0.7489
AT1G04430			S-adenosyl-L-methionine-depend...		Lus10021177 [exp]	13.7	0.8222
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10002939 [exp]	22.1	0.8042
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10011259 [exp]	24.5	0.7268
AT1G04430			S-adenosyl-L-methionine-depend...		Lus10011815 [exp]	26.1	0.8089

Compare expression of checked genes

Lus10035439 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.