Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10330 602 / 0 Cyclin-like family protein (.1) AT2G41630 556 / 0 TFIIB transcription factor IIB (.1) AT3G29380 241 / 1e-77 pBRP2 plant-specific TFIIB-related protein 2, Cyclin-like family protein (.1) AT3G57370 165 / 8e-48 Cyclin family protein (.1) AT4G10680 99 / 9e-25 transcription factor IIB (TFIIB) family protein (.1) AT4G36650 90 / 2e-19 ATPBRP plant-specific TFIIB-related protein (.1.2) AT5G39230 51 / 4e-08 TFIIB zinc-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016260 [exp] 504 / 0 AT3G10330 499 / 5e-180 Cyclin-like family protein (.1) Lus10031055 [exp] 431 / 5e-153 AT3G10330 355 / 7e-124 Cyclin-like family protein (.1) Lus10031056 [exp] 113 / 3e-31 AT3G10330 109 / 7e-31 Cyclin-like family protein (.1) Lus10024022 [exp] 89 / 4e-19 AT4G36650 610 / 0.0 plant-specific TFIIB-related protein (.1.2) Lus10041732 [exp] 86 / 2e-18 AT4G36650 605 / 0.0 plant-specific TFIIB-related protein (.1.2) Lus10029285 [exp] 73 / 3e-16 AT3G10330 71 / 3e-16 Cyclin-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G057100 [exp] 595 / 0 AT3G10330 611 / 0.0 Cyclin-like family protein (.1) Potri.006G048400 [exp] 591 / 0 AT3G10330 605 / 0.0 Cyclin-like family protein (.1) Potri.015G067500 [exp] 478 / 5e-171 AT3G10330 499 / 5e-180 Cyclin-like family protein (.1) Potri.017G093100 [exp] 308 / 4e-104 AT3G10330 333 / 1e-114 Cyclin-like family protein (.1) Potri.007G027600 [exp] 88 / 7e-19 AT4G36650 575 / 0.0 plant-specific TFIIB-related protein (.1.2) Potri.009G039100 [exp] 45 / 6e-05 AT3G09360 412 / 7e-134 Cyclin/Brf1-like TBP-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF08271 [flax] [poplar] TF_Zn_Ribbon TFIIB zinc-binding CL0065 [flax] [poplar] Cyclin PF00382 [flax] [poplar] TFIIB Transcription factor TFIIB repeat
Representative CDS sequence Show only first row Show all	>Lus10035440 pacid=23170561 polypeptide=Lus10035440 locus=Lus10035440.g ID=Lus10035440.BGIv1.0 annot-version=v1.0 ATGTCGGATGCTTACTGCTCGGACTGCAAGCGCCAGACGGAGGTGGTGTTCGATCACTCGGCGGGGGACACCGTCTGCTCCGAGTGCGGCCTTGTCCTCG AGTCTCACTCCATCGACGAGACCTCCGAGTGGAGGACTTTCGCCAACGAGTCTGGGGACAACGATCCCGTCCGTGTCGGAGGTCCCACCAACCCGCTCCT CACCGACGGCGGCTTGTCCACCGTGATCGCCAAGCCTAATGGTGCTTCGGGGGATTTTTTGTCCTCTTCGTTGGGGAGGTGGCAGAATCGGGGTTCAAAC CCTGATCGGGGATTGATACTGGCGTTCAAGACTATTGCCACCATGTCTGATAGGCTGGGACTTGTTGCAACTATCAAGGACCGGGCAAATGAGATATTCA AGAGGGTGGAGGATCAAAAGTCTAGCAGAGGAAGAAATCAGGATGCCTTACTGGCTGCTTGCCTCTACATTGCTTGTAGGCAAGAGGACAAGCCACGTAC TGTGAAGGAAATTTGCTCCGTTGCCAATGGAGCCACAAAGAAGGAAATTGGCAGAGCAAAAGAATACATAGTGAAACAGCTGGGACTGGAGACAGGCCAG TCAGTTGAAATGGGAACTATACATGCTGGAGACTTCATGAGGCGATTTTGCTCTAATCTTGGTATGACTAACCAAGCAATGAAAGCCGCCCAGGAGTCTG TTCAGAAGTCCGAAGAGTTCGACATAAGGTCAGAAAGAAATCCATGCGCTACAGTTGTAATGGTTGTGACTGCGATTAAGGTTGTTCAGCAGCTTTATAA TTTCCCCGGTTTCATGGTTAACAGGAGGAGCCCGATATCTATCGCAGCAGCAGTTATATACATTATAACGCAACTATCAGATGACAAGAAAGCTCTAAGA GATATATCGCTGGCAACGGGTGTAGCTGAAGGGACGATAAGGAACTCGTACAAGGATCTGTATCCTCATGTGTCTAAGATCATACCTGGATGGTATGCTA AGGAAGAGGATCTCAAGAACCTTTCCAGTCCTTAA
AA sequence Show only first row Show all	>Lus10035440 pacid=23170561 polypeptide=Lus10035440 locus=Lus10035440.g ID=Lus10035440.BGIv1.0 annot-version=v1.0 MSDAYCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLTDGGLSTVIAKPNGASGDFLSSSLGRWQNRGSN PDRGLILAFKTIATMSDRLGLVATIKDRANEIFKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQ SVEMGTIHAGDFMRRFCSNLGMTNQAMKAAQESVQKSEEFDIRSERNPCATVVMVVTAIKVVQQLYNFPGFMVNRRSPISIAAAVIYIITQLSDDKKALR DISLATGVAEGTIRNSYKDLYPHVSKIIPGWYAKEEDLKNLSSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10330			Cyclin-like family protein (.1...		Lus10035440 [exp]	0	1
AT3G10330			Cyclin-like family protein (.1...		Lus10031055 [exp]	1.0	0.8579
AT1G63220			Calcium-dependent lipid-bindin...		Lus10002235 [exp]	2.0	0.8428
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Lus10027924 [exp]	3.0	0.8363
AT2G01470		ATSEC12, STL2P	SEC12P-like 2 protein (.1)		Lus10037313 [exp]	3.7	0.8101
AT1G63220			Calcium-dependent lipid-bindin...		Lus10029565 [exp]	7.3	0.7782
AT3G59920		ATGDI2	RAB GDP dissociation inhibitor...		Lus10027094 [exp]	7.7	0.8212
AT5G66590			CAP (Cysteine-rich secretory p...		Lus10022481 [exp]	8.1	0.8139
AT1G56230			Protein of unknown function (D...		Lus10029871 [exp]	12.4	0.8016
AT5G14360			Ubiquitin-like superfamily pro...		Lus10022315 [exp]	13.0	0.7847
AT5G18900			2-oxoglutarate (2OG) and Fe(II...		Lus10016271 [exp]	13.0	0.8127

Compare expression of checked genes

Lus10035440 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.