Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41640 545 / 0 Glycosyltransferase family 61 protein (.1.2) AT3G57380 529 / 0 Glycosyltransferase family 61 protein (.1) AT3G10320 509 / 7e-178 Glycosyltransferase family 61 protein (.1) AT2G03370 278 / 4e-88 Glycosyltransferase family 61 protein (.1) AT2G03360 273 / 3e-86 Glycosyltransferase family 61 protein (.1.2) AT3G18170 238 / 8e-74 Glycosyltransferase family 61 protein (.1) AT3G18180 233 / 9e-71 Glycosyltransferase family 61 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031057 [exp] 867 / 0 AT2G41640 543 / 0.0 Glycosyltransferase family 61 protein (.1.2) Lus10018048 [exp] 609 / 0 AT2G41640 569 / 0.0 Glycosyltransferase family 61 protein (.1.2) Lus10018046 [exp] 535 / 0 AT3G10320 530 / 0.0 Glycosyltransferase family 61 protein (.1) Lus10042043 [exp] 332 / 4e-111 AT3G10320 335 / 1e-112 Glycosyltransferase family 61 protein (.1) Lus10031058 [exp] 289 / 1e-86 AT3G10310 880 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10036806 [exp] 268 / 6e-84 AT2G03370 381 / 4e-129 Glycosyltransferase family 61 protein (.1) Lus10042044 [exp] 253 / 2e-76 AT2G41640 257 / 4e-78 Glycosyltransferase family 61 protein (.1.2) Lus10036003 [exp] 243 / 1e-73 AT3G18180 360 / 2e-119 Glycosyltransferase family 61 protein (.1) Lus10016707 [exp] 239 / 3e-72 AT3G18180 367 / 3e-122 Glycosyltransferase family 61 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G048500 [exp] 598 / 0 AT2G41640 604 / 0.0 Glycosyltransferase family 61 protein (.1.2) Potri.016G057000 [exp] 579 / 0 AT2G41640 584 / 0.0 Glycosyltransferase family 61 protein (.1.2) Potri.010G162200 [exp] 286 / 3e-91 AT2G03360 407 / 3e-139 Glycosyltransferase family 61 protein (.1.2) Potri.008G092700 [exp] 259 / 1e-80 AT2G03360 377 / 1e-127 Glycosyltransferase family 61 protein (.1.2) Potri.010G162100 [exp] 259 / 1e-80 AT2G03360 371 / 1e-124 Glycosyltransferase family 61 protein (.1.2) Potri.015G042300 [exp] 253 / 2e-77 AT3G18170 438 / 1e-150 Glycosyltransferase family 61 protein (.1) Potri.012G051500 [exp] 249 / 1e-75 AT3G18170 451 / 1e-155 Glycosyltransferase family 61 protein (.1) Potri.015G042200 [exp] 239 / 1e-72 AT3G18180 441 / 3e-151 Glycosyltransferase family 61 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04577 [flax] [poplar] DUF563 Protein of unknown function (DUF563)
Representative CDS sequence Show only first row Show all	>Lus10035441 pacid=23170623 polypeptide=Lus10035441 locus=Lus10035441.g ID=Lus10035441.BGIv1.0 annot-version=v1.0 ATGGGTCTGCACCGTCATAATCACCATCAGTTGTTGCTAGAACAGGACGAGGAGATGGGCGGAGGAGGAGGAGGAGGAGTCAGAGGCCTTGTTCTTGTCT TCACTAACAACAACAACAACTCCAAGAAACCATCAACCACAGTAATAACAACAAGAAGAACCAAGCTCATCTCTCTGCTCTTCTTCTCCCTCTCCCTCCT CTCCTTCTTCATCATCCTTTCCCCTTACTACTTCCCCTCCTTATACTCTCTTGTAGATGTGGACTCAAACGATCTCCCGCCTCCATGTTCATCAGTCCAG AACGGAACAATCTGCTGCGACAGAACCAGCAGCATTCGTACAGACGTATGCACCATGAGAGGAGATATCAGGACTCGGTCCTCCTATTCTTCAATCTTCC TCTACACATCCATGGCGGATGATGATGACCACTCAACAACCAGACAGGAGAACATCAGGCCTTACACTAGGAAATGGGAGACCAGCGTCATGAACACCAT CGACGAGCTCCACCTGGTTCAAACAAACAAACAACAGGAACAACACCGTTGTGATGTGAAGCATGAAGTTCCGGCGGTGTTCTTCTCCACGGGAGGGTAC ACGGGGAACGTCTACCACGAATTCAACGACGGGATTCTCCCTCTCTACTTGACGTCTCACAGATTCAACAAGAAAGTCGTGTTCGTCATCCTTGAGTATC ATCCATGGTGGATTACCAAATACTCCGACGTCCTCGCCGAGCTTTCCGACTACCCCGCCGTGGATTACTCTGGCGACAACAGGACCCACTGCTTTACCGA AGCAATCGTTGGACTCAAAATCCACGACGAACTGTCGATCAATCCTGCTGCTCTCCTCAACGAAAGCGAGACAAACATCGTCGATTTCCACAACCTCCTC GACCGAGCCTACGCGCCTCGAATCAAATCGATCATCGAGGACGAACGACAAGAAGAAGCTTCCGGAAGACCTACCTCTCTACAACTCGATCAACAACAAC AACAAATACAGCGTCCAAAACTGGTGATCGTGTCCCGAAACGGATCGAGATCGATAACTAACGAGGACGCTTTAGCCAAATTGGGGGAAAAGGTAGGGTT CCGAGTGGAAATTCTAAGACCTGACCCGACGACGGAGCTGGCGAAGATCTACAAATCGATGAACTCTAGCGACGTGATGATCGGAGTGCACGGAGCGGCG ATGACGCACTTCCTGTTCATGAGGCCAGGGTGCGGTTTCATCCAGGTAATCCCACTCGGTACAGAGTGGGCGGCGGACAGCTACTACGGCGAGCCGGCGA GGAAGATGGGACTCAAGTACATCGGCTACAGAATCCTTCCGAAGGAGAGCTCTCTGTACGACAAGTACGAGAAGGACGACCCCGTGCTCCGAGATCCGGA GAGCGTTTCGCAGAAGGGGTGGGAGTATACGAAGAAGATCTATCTGGATAGTCAGAATGTGAAGCTGGATCTGAGAAGGTTTAAGAAGAGGCTGCAGAAG GCTTATGAACTCGCCGTCGCTAAACGGTCTGAGAATTAG
AA sequence Show only first row Show all	>Lus10035441 pacid=23170623 polypeptide=Lus10035441 locus=Lus10035441.g ID=Lus10035441.BGIv1.0 annot-version=v1.0 MGLHRHNHHQLLLEQDEEMGGGGGGGVRGLVLVFTNNNNNSKKPSTTVITTRRTKLISLLFFSLSLLSFFIILSPYYFPSLYSLVDVDSNDLPPPCSSVQ NGTICCDRTSSIRTDVCTMRGDIRTRSSYSSIFLYTSMADDDDHSTTRQENIRPYTRKWETSVMNTIDELHLVQTNKQQEQHRCDVKHEVPAVFFSTGGY TGNVYHEFNDGILPLYLTSHRFNKKVVFVILEYHPWWITKYSDVLAELSDYPAVDYSGDNRTHCFTEAIVGLKIHDELSINPAALLNESETNIVDFHNLL DRAYAPRIKSIIEDERQEEASGRPTSLQLDQQQQQIQRPKLVIVSRNGSRSITNEDALAKLGEKVGFRVEILRPDPTTELAKIYKSMNSSDVMIGVHGAA MTHFLFMRPGCGFIQVIPLGTEWAADSYYGEPARKMGLKYIGYRILPKESSLYDKYEKDDPVLRDPESVSQKGWEYTKKIYLDSQNVKLDLRRFKKRLQK AYELAVAKRSEN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41640			Glycosyltransferase family 61 ...		Lus10035441 [exp]	0	1
					Lus10039778 [exp]	1.7	0.8915
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10031473 [exp]	6.3	0.8850
AT1G20270			2-oxoglutarate (2OG) and Fe(II...		Lus10005620 [exp]	6.9	0.8503
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10031472 [exp]	10.9	0.8684
AT1G56240		ATPP2-B13	phloem protein 2-B13 (.1)		Lus10031471 [exp]	12.8	0.8701
AT3G55640			Mitochondrial substrate carrie...		Lus10040257 [exp]	15.7	0.8179
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10020773 [exp]	16.1	0.8444
AT5G65380			MATE efflux family protein (.1...		Lus10020952 [exp]	19.0	0.8051
AT1G76650		CML38	calmodulin-like 38 (.1.2.3)		Lus10022343 [exp]	19.1	0.8547
AT5G49190		ATSUS2, SSA, SU...	SUCROSE SYNTHASE FROM ARABIDOP...		Lus10010308 [exp]	21.7	0.8583

Compare expression of checked genes

Lus10035441 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.