Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10310 846 / 0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT2G47500 552 / 1e-180 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT5G27000 546 / 4e-178 KATD, ATK4 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) AT1G09170 455 / 3e-143 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G73860 451 / 1e-141 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G44730 450 / 1e-140 AtKIN14h, ATKP1 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) AT5G41310 439 / 1e-137 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G18410 439 / 8e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G63640 436 / 2e-135 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) AT1G72250 288 / 4e-81 Di-glucose binding protein with Kinesin motor domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031058 [exp] 1765 / 0 AT3G10310 880 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10018049 [exp] 1289 / 0 AT5G27000 874 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10042045 [exp] 1278 / 0 AT3G10310 863 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10015212 [exp] 540 / 6e-177 AT5G27000 924 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10029865 [exp] 447 / 5e-140 AT5G27000 1014 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10009851 [exp] 445 / 1e-139 AT2G47500 1245 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10032264 [exp] 449 / 2e-139 AT1G63640 991 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10024628 [exp] 445 / 1e-137 AT1G63640 980 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10002007 [exp] 438 / 1e-135 AT1G63640 941 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G048650 [exp] 630 / 0 AT3G10310 503 / 2e-169 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.005G021100 [exp] 574 / 0 AT2G47500 1051 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.013G011500 [exp] 570 / 0 AT5G27000 1081 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Potri.014G125700 [exp] 561 / 0 AT2G47500 1218 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.002G201000 [exp] 548 / 8e-179 AT2G47500 1237 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.006G048600 [exp] 441 / 2e-143 AT3G10310 395 / 1e-127 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.011G165200 [exp] 452 / 9e-141 AT3G44730 1300 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.001G467600 [exp] 451 / 2e-140 AT3G44730 1266 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.001G104000 [exp] 440 / 1e-136 AT1G63640 1102 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.003G127800 [exp] 426 / 4e-131 AT1G63640 1065 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain CL0188 [flax] [poplar] CH PF00307 [flax] [poplar] CH Calponin homology (CH) domain
Representative CDS sequence Show only first row Show all	>Lus10035442 pacid=23170613 polypeptide=Lus10035442 locus=Lus10035442.g ID=Lus10035442.BGIv1.0 annot-version=v1.0 ATGGAGGACCGTTCTACAACTGGATTTTACGACGTCTTGGCTTCAAGAAAAGCCGAGGAAGCTGGTATGTACGATCATTGTATTAGCTTTCTTCTAGTCT ATAGGCGTTACCAAGCAACTGAGTGGCTGGAAAGTGTGGTGGGTCCTTTGGGCATATCGAGCCGTCCATCGGAGAAAGAATTCATTTCTCGCTTGAGAAA TGGATTGATCCTCTGCAACGTCATTAACAAAGTTCATCCAGGAGCGGTCACTAAGGTCTTCTCAAATGCTTTGAGTCGAACTTCTTTTGAATGTGGTGCA TTGGTTGTGGAGACTCATGTGCCTATGCAATCTCTGGCTAGAGAATCACAGCCATTGCCGGCTTATCAGTATTTTGAGAATGTTAGGAACTTTCTGGTAG CTATGGAGGATTTGAGACTTACAGCATTTGAAGCTTCTGATATTGAAAGGGATACGTTGGAAGCGGGATCAACTGCCAAGGTGGTTGATAGCATATTAGC CCTGAAGTCATACCATGAGCATAAGAATACGACTGGTGGGAATGGGGCTTTCAAGTCTATAAGGTCTCCCGTGGGTGTGCATAGTGGTAGTAGGAACAAT CTCCAAGGGTTATCGATAGATCCTTGTCGGCGGTTGGAGATGGACGTAGCGGCTGAGGCACATCCATCTGAGAATACTGAATTTCAGAAACTCCAAGATG TACTGGTGAAGGCACTTGCAGACTACATGGTTGGTGCAAAAGAAAACATGGGTGACAACTTTTTCGCCTCCTTCCATTCTGGGGATGTTGGTCCAATGAG GCTGTTCGGAAGGATTGTTGCAAGTTGTTTAAATGAGAATATGCAGAAAAAGTTTCCTGAGGGCCTAGCAGTGTCCAAAGATTGCCTGAAAGACAGTAGT AACTTGCCTGCACATTTGGAAACATCTCCATTGGAGGAGATATCAGAAAACAGAACGAGCAAGTGTTGTCAGACTTGCTTAATAGAAGGGAGCTGCAATC AAAAGCGTTTATTGAAAATTCAGGAAAGAGAACTCCAGGATTTGAAGACCTTGTTGACCACAACTAAGAAGGAATTTCAAGGCTTACAATCCCAGTTGCA GAACGATCTGAGACACTATGGCATTCATGTCCAAGAGATGGCTACTGCTGCTCAGGGATATCACAAAGTGTTGAAAGAAAACAGGTTATTATACAATATG GTTCAGGATTTGAAAGGAAATATTCGAGTTTTCTGTAGAGTACGGCCTTCATTCAACACTGGAGCAAGCAATGCAATTGAAGTTGTTGGACACGATGATT CGCTGGTCGTTATAGATCCATCAAAGCCCACAAAAGATGGAAGGAGACATTTTCAGTTTAATCAGGTGTTCGGCCCTACAGCCACTCAAGGTGACTTTCT TACTTCTAAGTTCGGGAATGTGTTCGACCATGTCCAACCCTTAATTCGATCTGTGATGGATGGTTACAATGTATGCATTTTTGCATACGGCCAAACTGGC TCTGGGAAAACGTATACAATGAGTGGTCCACCAGGTGGATCAACCAAGGAGTTGGGAATAAATTACCTAGCCCTCGATGATCTTTTCCAAATCATGCGAT CTGACAAAGTAATATGCTTTTTCCCCTTAAATGATCACACATTAGAAATTCGGAGTTGTGCTGGAGAAGATGGTCTCACTCTGCCAGATGCTACGATGCT TCCCGTGACATCTACCTGTGATGTTCTTAAACTGATGAAACTTGGAGAGGTGAATCGTGTTGTCAGTTGTACTGCAATGAACAATAGAAGCAGTCGTTCA CACAGTGTCCTGACAGTTCATGTACATGGGAAAGATGAGTCTGGAGCCAATCTTAGAGGCTGCCTGCATTTGGTGGACTTAGCAGGAAGTGAAAGAGTAG ACAAATCAGAAGTCACCGGGGATCGGCTCAAGGAAGCTCAATATATCAATAAGTCGCTCTCATGCCTTGGAGATGTGGTCACTGCATTGGCACAGAAGAA TTCCCACATCCCGTACAGAAACAGCAAACTCACACTTCTGCTGCAAGATTCCTTAGGTGGACATGCTAAAACACTGATGTTTGCTCATGTGAGCCCAGAA GAAGACTCTGTATCAGAGACTGTCAGCACTTTGAAGTTTGCTCAACGGGTATCAACTGTCGAGCTTGGTGCTGCTCGTGCAAACAAAGAGAGCAGTGAGA TTATACAACTCAGGGAACAGGTTGAGAACCTCAAAACGGTGCTAGCTAATAAACAGTCACAAGATCAGCAGATTCAAAAGGTAAATAGTGAAGCAAGATA TCCAGTAGGGAAATTGAAGGGGACGAATGATAGAACTCCTCCTCGGCCAAGGAGACTCAGTATAGAGAATAGCAGCAGCAAGCTGACCAAGACCGCAAAC ATCGAGGATAGGAAGCCATCGGGAACGCCTTCGCTGCCTGCACGTTCTCGAAGGCTAAGTCTGGAGGCTCCATCATACTATAAGAGGGAACATTTCCAGA CAAAAGTAGCAGTGGCAGCAAATGAGGAAATTATAACAAAGCCCCTGCCATTTGAGTCCATGATGATGACACCAAAGAAGTACAACCAGCCACAGGGTGT AGAAGCCATGTCGAAGCCTTCATTTGGCTACTCTACTAGCTCGACGGTGAAGATCTATCAACGCAATCCTACGAAAAGTCCCACTAGATGTTCGTATCAA ACTGTCAGGATAGACAGTAGAACACAAATTCCTCATCTGCAGGTGCCATTAGAGACAACAACAGAACACCAGGTGCTTTCCAGCAATACGGTCCAGATCC TGACACGAACCGAAGCTCCCATTTCTGCGGCGAGTACTGGCAAAGGGTCTCAGTTTAGGAAGTCGATTCGGAACATTGGGAAGCTGATTAATGGTTTTGA TAAGAGGAATCCAATCAAAGGTAATGAAGGGATTATCAAGTCGGCAATTGGCAGTAATAGTAGCAGTAGTGGTTCAAGAGCAGCAAGGAGACAATCACTG GCTGGAATTTACAAGTCTCAGACGTCTTCTTCCCTTGGAGTTGATTTGGGTGAGTTGGATAAATCATCAAACTTGATGAGTCGAGAAGGAATGCGAAGAC ACCACCACCTCAAGGCCATTCATCATTACTGGACAAAAGATGGCATTAGAAAAGAGGATTGA
AA sequence Show only first row Show all	>Lus10035442 pacid=23170613 polypeptide=Lus10035442 locus=Lus10035442.g ID=Lus10035442.BGIv1.0 annot-version=v1.0 MEDRSTTGFYDVLASRKAEEAGMYDHCISFLLVYRRYQATEWLESVVGPLGISSRPSEKEFISRLRNGLILCNVINKVHPGAVTKVFSNALSRTSFECGA LVVETHVPMQSLARESQPLPAYQYFENVRNFLVAMEDLRLTAFEASDIERDTLEAGSTAKVVDSILALKSYHEHKNTTGGNGAFKSIRSPVGVHSGSRNN LQGLSIDPCRRLEMDVAAEAHPSENTEFQKLQDVLVKALADYMVGAKENMGDNFFASFHSGDVGPMRLFGRIVASCLNENMQKKFPEGLAVSKDCLKDSS NLPAHLETSPLEEISENRTSKCCQTCLIEGSCNQKRLLKIQERELQDLKTLLTTTKKEFQGLQSQLQNDLRHYGIHVQEMATAAQGYHKVLKENRLLYNM VQDLKGNIRVFCRVRPSFNTGASNAIEVVGHDDSLVVIDPSKPTKDGRRHFQFNQVFGPTATQGDFLTSKFGNVFDHVQPLIRSVMDGYNVCIFAYGQTG SGKTYTMSGPPGGSTKELGINYLALDDLFQIMRSDKVICFFPLNDHTLEIRSCAGEDGLTLPDATMLPVTSTCDVLKLMKLGEVNRVVSCTAMNNRSSRS HSVLTVHVHGKDESGANLRGCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVVTALAQKNSHIPYRNSKLTLLLQDSLGGHAKTLMFAHVSPE EDSVSETVSTLKFAQRVSTVELGAARANKESSEIIQLREQVENLKTVLANKQSQDQQIQKVNSEARYPVGKLKGTNDRTPPRPRRLSIENSSSKLTKTAN IEDRKPSGTPSLPARSRRLSLEAPSYYKREHFQTKVAVAANEEIITKPLPFESMMMTPKKYNQPQGVEAMSKPSFGYSTSSTVKIYQRNPTKSPTRCSYQ TVRIDSRTQIPHLQVPLETTTEHQVLSSNTVQILTRTEAPISAASTGKGSQFRKSIRNIGKLINGFDKRNPIKGNEGIIKSAIGSNSSSSGSRAARRQSL AGIYKSQTSSSLGVDLGELDKSSNLMSREGMRRHHHLKAIHHYWTKDGIRKED

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10310			P-loop nucleoside triphosphate...		Lus10035442 [exp]	0	1
AT2G25270			unknown protein		Lus10001929 [exp]	2.4	0.9475
AT4G17000			unknown protein		Lus10035651 [exp]	3.0	0.9618
AT5G25590			Protein of unknown function (D...		Lus10037902 [exp]	6.5	0.9458
AT3G52110			unknown protein		Lus10029522 [exp]	6.8	0.9272
AT2G19520		ATMSI4, ACG1, N...	MULTICOPY SUPPRESSOR OF IRA1 4...		Lus10011936 [exp]	7.4	0.9461
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Lus10033674 [exp]	8.6	0.9497
AT3G22520			unknown protein		Lus10041202 [exp]	10.2	0.9278
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10010642 [exp]	10.5	0.9388
AT3G01710			TPX2 (targeting protein for Xk...		Lus10032115 [exp]	10.5	0.9396
AT3G48900			single-stranded DNA endonuclea...		Lus10005744 [exp]	11.6	0.9230

Compare expression of checked genes

Lus10035442 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.