Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41660 224 / 7e-72 MIZ1 mizu-kussei 1, Protein of unknown function, DUF617 (.1) AT5G23100 178 / 3e-54 Protein of unknown function, DUF617 (.1) AT3G25640 172 / 8e-52 Protein of unknown function, DUF617 (.1) AT5G06990 167 / 5e-50 Protein of unknown function, DUF617 (.1) AT4G39610 149 / 5e-43 Protein of unknown function, DUF617 (.1) AT2G21990 146 / 5e-42 Protein of unknown function, DUF617 (.1) AT2G37880 144 / 2e-41 Protein of unknown function, DUF617 (.1) AT5G42680 135 / 4e-38 Protein of unknown function, DUF617 (.1.2) AT1G21050 127 / 8e-35 Protein of unknown function, DUF617 (.1) AT1G76610 122 / 4e-33 Protein of unknown function, DUF617 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031059 [exp] 447 / 2e-159 AT2G41660 258 / 4e-85 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Lus10019166 [exp] 179 / 1e-54 AT3G25640 258 / 2e-86 Protein of unknown function, DUF617 (.1) Lus10027241 [exp] 177 / 5e-54 AT5G23100 270 / 1e-90 Protein of unknown function, DUF617 (.1) Lus10034386 [exp] 177 / 2e-53 AT3G25640 268 / 3e-90 Protein of unknown function, DUF617 (.1) Lus10000863 [exp] 171 / 1e-51 AT5G23100 276 / 3e-93 Protein of unknown function, DUF617 (.1) Lus10018050 [exp] 162 / 1e-47 AT2G41660 171 / 1e-51 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Lus10042046 [exp] 160 / 4e-47 AT2G41660 170 / 3e-51 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Lus10009615 [exp] 159 / 7e-47 AT5G23100 258 / 4e-86 Protein of unknown function, DUF617 (.1) Lus10036630 [exp] 155 / 2e-44 AT4G39610 308 / 5e-105 Protein of unknown function, DUF617 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G048800 [exp] 224 / 2e-72 AT2G41660 241 / 3e-79 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Potri.016G056800 [exp] 216 / 3e-69 AT2G41660 202 / 6e-64 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Potri.010G131600 [exp] 194 / 2e-60 AT3G25640 249 / 1e-82 Protein of unknown function, DUF617 (.1) Potri.012G058300 [exp] 192 / 6e-60 AT5G23100 261 / 7e-88 Protein of unknown function, DUF617 (.1) Potri.015G053000 [exp] 191 / 2e-59 AT5G23100 293 / 3e-100 Protein of unknown function, DUF617 (.1) Potri.008G114500 [exp] 187 / 1e-57 AT3G25640 228 / 2e-74 Protein of unknown function, DUF617 (.1) Potri.001G031900 [exp] 164 / 5e-49 AT5G06990 275 / 6e-93 Protein of unknown function, DUF617 (.1) Potri.003G193700 [exp] 163 / 1e-48 AT5G06990 328 / 6e-114 Protein of unknown function, DUF617 (.1) Potri.005G084000 [exp] 156 / 5e-46 AT2G21990 327 / 4e-114 Protein of unknown function, DUF617 (.1) Potri.002G002000 [exp] 146 / 3e-42 AT1G21050 236 / 1e-78 Protein of unknown function, DUF617 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04759 [flax] [poplar] DUF617 Protein of unknown function, DUF617
Representative CDS sequence Show only first row Show all	>Lus10035443 pacid=23170492 polypeptide=Lus10035443 locus=Lus10035443.g ID=Lus10035443.BGIv1.0 annot-version=v1.0 ATGGCGCTGCAGAGAGCCACCAGCAGTAGCAACAAGATCGCGCCTTCCTCCTCCTCATCCGGCATATCCCCCTACTCTAACTACTACACCATCACCATGC TCTCACGATCCTCCTCCTCCACCTCATCATCCAGCCCTCCTCCCATCCCTGAAACTGACATCATCATCGTTCCCACCCGCAACTCCACCTCCGGCCAGCT TCTCCTCGCCGTCCGCTCACCGTCTCCAGCCACCACCAAGTATTATTACAAACACTTCAAGCTCCCCTCACTTCTCCGCACAATCCTCAAAGCTCTCTCT TCACCTTATACACTCCTCATCCCCCCGACCGCCCGTCAATGGCTGACGTCATCCACGCCGTCCATATCTCCAGTCTCCACGGAGCTGATTAGGACGACCA CATCCGCCACACGCGGGCTGGGGAGGAAGGTGACGGGCACGCTCTATGGCTACAAAAGGGGCCACGTGACGTTTGCGGTTCAGACCGACTCGCAGTCCGA ACCGGTATTTTTGATCGAGCTGGCCGTCTCGACCGCCTCCCTGGTCAAGGAGATGTCGTCCGGTTTGGTCAGGATAGCGCTAGAGTGCGAGAAGTCCAGG TCAGCGGCCGGGAATAAGCTGTATGAGGAGCCGGTGTGGAGCATGTACTGCAACGGGAGGAAGTGCGGGTACGCCACGGCGCGTGAGAGGTGTAATAAAT TGGACACGCGCGTGCTCACCACGGTGCGGACTGTTTCGGTCGGGGCAGGGGTGATTCGTCCTGTTGCGGCGCTGGAAGGGGGAGGGAAGGAAACGAGGGC GACGTCGTTTGGAGGGGAGATGATGATGGGTGATTTGATGTATATGAGGGCTAAGTTCGAGAGAGTGGTTGGGAGCCGTGACTCGGAGGCGTTTTACATG ATGAATCCTGACGGTAACGGTGGTCCTGAGCTCAGTCTGTTTCTTCTCCGGCTGTGA
AA sequence Show only first row Show all	>Lus10035443 pacid=23170492 polypeptide=Lus10035443 locus=Lus10035443.g ID=Lus10035443.BGIv1.0 annot-version=v1.0 MALQRATSSSNKIAPSSSSSGISPYSNYYTITMLSRSSSSTSSSSPPPIPETDIIIVPTRNSTSGQLLLAVRSPSPATTKYYYKHFKLPSLLRTILKALS SPYTLLIPPTARQWLTSSTPSISPVSTELIRTTTSATRGLGRKVTGTLYGYKRGHVTFAVQTDSQSEPVFLIELAVSTASLVKEMSSGLVRIALECEKSR SAAGNKLYEEPVWSMYCNGRKCGYATARERCNKLDTRVLTTVRTVSVGAGVIRPVAALEGGGKETRATSFGGEMMMGDLMYMRAKFERVVGSRDSEAFYM MNPDGNGGPELSLFLLRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41660		MIZ1	mizu-kussei 1, Protein of unkn...		Lus10035443 [exp]	0	1
					Lus10004902 [exp]	3.0	0.7494
AT3G03000			EF hand calcium-binding protei...		Lus10004610 [exp]	6.0	0.7421
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10000792 [exp]	15.4	0.7377
AT1G06340			Plant Tudor-like protein (.1)		Lus10039027 [exp]	19.4	0.7186
					Lus10005398 [exp]	19.5	0.6485
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10023036 [exp]	19.9	0.7186
AT5G36220		CYP91A1, CYP81D...	CYTOCHROME P450 91A1, cytochro...		Lus10018718 [exp]	20.3	0.7186
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10026169 [exp]	20.8	0.7186
AT2G44220			Protein of Unknown Function (D...		Lus10006862 [exp]	21.2	0.7186
AT5G18080		SAUR24	small auxin up RNA 24, SAUR-li...		Lus10039962 [exp]	21.7	0.7618

Compare expression of checked genes

Lus10035443 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.