Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65650 469 / 1e-167 UCH2 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1) AT5G16310 426 / 1e-150 UCH1 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1) AT4G17510 62 / 5e-11 UCH3 ubiquitin C-terminal hydrolase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031062 [exp] 594 / 0 AT1G65650 502 / 1e-180 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1) Lus10042047 [exp] 539 / 0 AT1G65650 484 / 8e-173 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1) Lus10020144 [exp] 81 / 1e-17 AT4G17510 349 / 2e-123 ubiquitin C-terminal hydrolase 3 (.1) Lus10026940 [exp] 69 / 9e-13 AT4G17510 327 / 4e-108 ubiquitin C-terminal hydrolase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G075200 [exp] 518 / 0 AT1G65650 489 / 1e-175 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1) Potri.004G130400 [exp] 504 / 0 AT1G65650 483 / 7e-173 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1) Potri.003G081000 [exp] 66 / 2e-12 AT4G17510 380 / 2e-135 ubiquitin C-terminal hydrolase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF01088 [flax] [poplar] Peptidase_C12 Ubiquitin carboxyl-terminal hydrolase, family 1
Representative CDS sequence Show only first row Show all	>Lus10035444 pacid=23170512 polypeptide=Lus10035444 locus=Lus10035444.g ID=Lus10035444.BGIv1.0 annot-version=v1.0 ATGTCTTGGTGCACCATTGAGTCCGATCCTGGTGTCTTCACCGAGCTCATACAGCAAATGCAAGTTAAAGGAGTTCAGGTTGAAGAGTTGTATTCCTTGG ACCATGATTCTCTTGATAGTCTTAGGCCAGTGTACGGCTTGATTTTCCTTTTCAAGTGGTACCCTGGCGAGAAAGATGACCGTCCCGTAGTGAAGGATCC CAATCCTGACCTGTTTTTTGCAAGTCAGGTGATCAACAATGCCTGCGCAACCCAAGCAATTCTGTCCATCCTGATGAACTCTCCAGACATAGACATTGGC CCCGAGTTATCAAAGCTGAAAGAATTCACCAAGAACTTCCCGCCCGAGCTCAAAGGGTTGGCTATCAACAACAGTGAAGCCATACGTGCAGCCCACAACA GCTATGCCAGACCAGAGCCATTCGTCTCCGATGAACAGAAAATTGCTGGGAAAGACGACGACATCTACCACTTCATTAGTTACTTGCCCGTCGATGGCAC CCTCTACGAACTTGACGGGCTGAAAGAAGGCCCCATCAGCCTAGGCCAGTGGTCCAACGATCTGGACTGGCTGCATCTGGTGCAGCCAGTAATCCTGGAG CGAATCGAGAGGTACTCCCAAAGCGAGATACGGTTCAATCTGTTGGCAGTAATCAAGAACAGGAAAGAAATGTACACCTCGGAGCTCAAGGAACTCCAGA GACAGAGGGAGCGAATCTTGCAGCAGATTGCGGGTTCCCAGGCCGAAGGTGGCAGCTTTGAAGCCCTGAGCAAGTCGTTGTCGGAGGTGAATGGTGGGAT CGAGACAGCGACCGGGAAGATACTGATGGAGGAAGAGAAGTTCAAGAAGTGGAGAACTGAGAACATCCGGAGGAAGCATAACTACATACCGTTTCTGTTC AACTTCCTCAAGATCCTTGCTGAGAAGAAGCAACTGAAGCCACTCGTTGAGAAAGCTAAGCAAAAAGCTGGCAATGCTAAGTGA
AA sequence Show only first row Show all	>Lus10035444 pacid=23170512 polypeptide=Lus10035444 locus=Lus10035444.g ID=Lus10035444.BGIv1.0 annot-version=v1.0 MSWCTIESDPGVFTELIQQMQVKGVQVEELYSLDHDSLDSLRPVYGLIFLFKWYPGEKDDRPVVKDPNPDLFFASQVINNACATQAILSILMNSPDIDIG PELSKLKEFTKNFPPELKGLAINNSEAIRAAHNSYARPEPFVSDEQKIAGKDDDIYHFISYLPVDGTLYELDGLKEGPISLGQWSNDLDWLHLVQPVILE RIERYSQSEIRFNLLAVIKNRKEMYTSELKELQRQRERILQQIAGSQAEGGSFEALSKSLSEVNGGIETATGKILMEEEKFKKWRTENIRRKHNYIPFLF NFLKILAEKKQLKPLVEKAKQKAGNAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Lus10035444 [exp]	0	1
AT3G19650			cyclin-related (.1)		Lus10002122 [exp]	1.0	0.8462
AT1G69450			Early-responsive to dehydratio...		Lus10036791 [exp]	2.0	0.8435
AT4G35740		ATRECQ3, RECQL3	A. THALIANA RECQ HELICASE 3, D...		Lus10028387 [exp]	3.2	0.8216
AT1G16570			UDP-Glycosyltransferase superf...		Lus10031569 [exp]	4.2	0.8146
AT1G18720			Protein of unknown function (D...		Lus10001646 [exp]	4.6	0.7646
AT2G41950			unknown protein		Lus10016243 [exp]	6.9	0.8363
AT3G12380		ATARP5	actin-related protein 5 (.1.2)		Lus10040281 [exp]	7.7	0.8313
AT1G66520		PDE194	pigment defective 194, formylt...		Lus10010978 [exp]	9.4	0.8115
AT2G21240	BBR_BPC	BPC4, BBR/BPC4,...	basic pentacysteine 4 (.1.2)		Lus10042056 [exp]	10.5	0.7642
AT4G25550			Cleavage/polyadenylation speci...		Lus10014987 [exp]	11.5	0.8119

Compare expression of checked genes

Lus10035444 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.