Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21090 667 / 0 ABCG15 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) AT1G51500 655 / 0 AtABCG12, WBC12, ABCG12, D3, CER5, ATWBC12 ECERIFERUM 5, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX 12, ATP-binding cassette G12, ABC-2 type transporter family protein (.1) AT1G51460 590 / 0 ABCG13 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) AT1G17840 543 / 0 AtABCG11, WBC11, DSO, ABCG11 ,COF1, ATWBC11 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) AT2G28070 337 / 8e-103 ABCG3 ATP-binding cassette G3, ABC-2 type transporter family protein (.1) AT3G18210 323 / 8e-102 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G22950 309 / 2e-96 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G48700 251 / 3e-76 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G01320 260 / 9e-75 ABCG7 ATP-binding cassette G7, ABC-2 type transporter family protein (.1.2.3.4) AT5G43660 233 / 5e-68 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031063 [exp] 1238 / 0 AT3G21090 659 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10027354 [exp] 603 / 0 AT3G21090 868 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10009961 [exp] 590 / 0 AT3G21090 971 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10009960 [exp] 577 / 0 AT3G21090 855 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10009959 [exp] 575 / 0 AT3G21090 860 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10040644 [exp] 519 / 6e-173 AT1G17840 1120 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Lus10031064 [exp] 495 / 5e-168 AT3G18210 433 / 1e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10023154 [exp] 420 / 8e-135 AT1G17840 613 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Lus10018268 [exp] 413 / 1e-134 AT1G17840 849 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G056700 [exp] 670 / 0 AT3G21090 739 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.001G255800 [exp] 655 / 0 AT3G21090 1038 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.009G051300 [exp] 653 / 0 AT3G21090 943 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.009G051200 [exp] 650 / 0 AT3G21090 1008 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.016G056600 [exp] 638 / 0 AT3G21090 744 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.001G255900 [exp] 630 / 0 AT3G21090 929 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.018G152600 [exp] 566 / 0 AT1G17840 1152 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.017G155300 [exp] 564 / 0 AT1G17840 1174 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.005G073050 [exp] 455 / 9e-148 AT1G17840 659 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.005G073100 [exp] 450 / 5e-146 AT1G17840 661 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10035445 pacid=23170618 polypeptide=Lus10035445 locus=Lus10035445.g ID=Lus10035445.BGIv1.0 annot-version=v1.0 ATGGAGTTGGAAGAAGGAATGATGACACAAACATTAGCAGCAGGAGGAAGTTGCCTTGTTTGGGAAGATCTAACTGTGACACTCAACAACAGCTTCAGCA GCAGCAACAACAAGCACTTGCTCGATGGGTTCACGGGTTTCGCTCAGCCGCATCGGATCATGGCCATCATGGGTCCTTCTGGCTCTGGCAAATCGACCTT CCTCGACGCTTTAGCTGGGAGACTTTCCCCGAAAGCGGAGATGAAAGGGAAAGTTTTGATCACTGGGAAGAAGATCCAAAGCTCCCTCATCAGCTCTAGA GACGTGGCTTACGTGACCCAGCAAGACGTGTTCTTGGGGACACTGACTGTGAAGGAAACACTCTGCTTCGGGGCTCGCCTGAGGCTGCCGGAGCTAACTA AGGACGAGCTGGACGAAGTGATCGAGGATGCGATGGTGAAGATGGGTCTTGAGGAGTGTGCTGATACCACAATCGGGAACTGGCATTTGAGAGGAATAAG CGGAGGGGAGAAGAGGAGGCTGACCATTGGCGTCGAGATACTGGCGCAGCCACATGTGCTGTGCTTGGATGAGCCCACGACTGGCCTTGACAGTGCCGCG TCTTTCTTCGTGGTTCAAGCTCTCCGCAACATTGCTCGCGATGGGAAGGTTGTGGTGTGTTCAATCCACCAGCCTACCAACGAAGTTTTTCGCCTGTTTG ACGATCTCCTCATTATATCTGGTGGAGAAACTGTCTACTTTGGAGAAACCCACTTGGCTGTCAAGTTCTTTGCTGACTGCGGCTTCCCCTGCCCGATCAG AAGAAACCCACCGGATCATTTCCTCCGGTGCATCACTCCAGAGTTCGATCAAGTCTTCACCGCCCTGAAGCAGACACAAAGAATGAACTATGCTGAACTC CCAGCAACAGATGGCTTGCTGAACTTGACAACTGCAGAGACCAGAGCAGCACTAGTGAAGAAGTACAACTCATCCGGCTTTCCACAGATTGCAAGAAAAA CAATTCGACAACTTCAACTACTAGATAATGATGATCATAATGGTCGGAGTAGCAGTGAGGCTATATCCATGAGGAAGATAAAGATTGGGAAACCGAAAAG GTGGAGGCAGCAGTTCTGCACATTAACACACCGTTCCTTTCTACACATGACTAGAGACCTTGGCTACTACTGGCTCCGAATCGCCTTCTACATTATGGTA TCACTCAGCACCGGAACTTTGGAGTTCGACATCGGGACATCCAGTGCCTCCATCATAGCCCGAGCCAAGGTCGACGGCTTCCTCTATGGCCTCATGATTT GCTTGTCCATTGGAGGCTTACCTTTCTTCCTCGATGAGATCAAGGCTTTCCATGGAGAGAGGCAAGGAGGGTACTATGGGGAGGCTGCTTATGTGCTGTC CAACTACATCTCCTCATTACCTTTCACTATAGTTATATCCTTTTCCTCAGGATCTATCTTGTACAGCATGGTGAAGTTCAATCCAGGATTCTCTCATATG CTCTACTTCTGCGTCAACCTCTTCTTCTGCATCTCCGTTTCAGAGGCCTGCGTCTTTGTAATCGCTTCTCTAATATCCAGTCCATTGCTGTCCATGGGGG CTTCTGTCGCTGTTACTGTGCTCAACCTGATGCCTTCCATTGTTTTTCGACCAATCCCGGACCTCCCAAAGATCTTCTGGAGGTACCCTTTGTCGTACAT CAGTTATGCAGCTTGGGGAACACAGGGGAATATGAAGAACGACATGATCGGACTGGAATTCGACAACGCGATACCTGGACGACCGAAGATCAAGGGCGAG ACGATTCTGGAAAAAACTTACGGTGTCAACCTACACTACTCTAAGTGGCTGGATGTAATAGCTCTGCTCTGCTTGCTAATAGCTTACAAGCCTCTTTACA AGGAGATACGTTCCCTTGACGCAGCAAAATTTTTTGTCCCATCATTTCTCCGAGCTGTCGAACAGGGCACAGAAGAAAGTTTCAGAAGTATAATAAAGGA AACAACGCCTGGAGTATATTCTTTTGATATGCTTCAGCCATCATTTTGTGAGATGTTGATTTCTGAGGTAGAAAACATTGAGAGGTGGGTGCATGATACA AAGTTCAAAATGATGCGCCCGAACACAATGAACCAATTTGGTGCCGTTCTTGACGACTTTGGCTTGGATCCAATGCTTGCTAAGTTGATGGATGGATTTA TTCATCCAATGGCTAAAGTTCTCTTCCCTGAGATTAACAGATTACCTCTGGATTCTCACCATGGCTTCATTGTCGAATATGGAACAGGCAAAGATGTTGA GCTAGGTTTCCATGTTGATGATTCAGAAGTAACCTTGAATGTTTGCTTGGGCAAGGATTTTCTTGGAGGGGAATTGTACTTTCGCGGTGCTCGTTGCGAG AAACATGTGAATATTATGACCCATCCAGAGGAAATAGGGGATTACATCCACCGTGCAGGACGTGCAGTTCTTCATCGAGGACGCCATAGGCACGGGGCTA GAGCAACGACTTCCGGACATCGTTTAAACCTAATTCTATGGTGTAGAAGGGAGTTGAAGAAGTACAAAACAGACTTCTCGAGCTGGTGTGGTGAATGCCT CCGTCGAAAAAAGGAAAGACAGCGCATGACAATCGCATCAACCAAAATGGTAACCACTCTCTTTAAGAGTTTTTCATTCATTCGTCATCTAAATTCCCAG GTACCAATGTCAAAATATCCTTCTTTCCTTGCAGGAACTGTTGAAGCGGGACGGTATTTCTTCTACATCCTGAAACCTTTGTATGCTCGATTAAGCCCCG TCTAG
AA sequence Show only first row Show all	>Lus10035445 pacid=23170618 polypeptide=Lus10035445 locus=Lus10035445.g ID=Lus10035445.BGIv1.0 annot-version=v1.0 MELEEGMMTQTLAAGGSCLVWEDLTVTLNNSFSSSNNKHLLDGFTGFAQPHRIMAIMGPSGSGKSTFLDALAGRLSPKAEMKGKVLITGKKIQSSLISSR DVAYVTQQDVFLGTLTVKETLCFGARLRLPELTKDELDEVIEDAMVKMGLEECADTTIGNWHLRGISGGEKRRLTIGVEILAQPHVLCLDEPTTGLDSAA SFFVVQALRNIARDGKVVVCSIHQPTNEVFRLFDDLLIISGGETVYFGETHLAVKFFADCGFPCPIRRNPPDHFLRCITPEFDQVFTALKQTQRMNYAEL PATDGLLNLTTAETRAALVKKYNSSGFPQIARKTIRQLQLLDNDDHNGRSSSEAISMRKIKIGKPKRWRQQFCTLTHRSFLHMTRDLGYYWLRIAFYIMV SLSTGTLEFDIGTSSASIIARAKVDGFLYGLMICLSIGGLPFFLDEIKAFHGERQGGYYGEAAYVLSNYISSLPFTIVISFSSGSILYSMVKFNPGFSHM LYFCVNLFFCISVSEACVFVIASLISSPLLSMGASVAVTVLNLMPSIVFRPIPDLPKIFWRYPLSYISYAAWGTQGNMKNDMIGLEFDNAIPGRPKIKGE TILEKTYGVNLHYSKWLDVIALLCLLIAYKPLYKEIRSLDAAKFFVPSFLRAVEQGTEESFRSIIKETTPGVYSFDMLQPSFCEMLISEVENIERWVHDT KFKMMRPNTMNQFGAVLDDFGLDPMLAKLMDGFIHPMAKVLFPEINRLPLDSHHGFIVEYGTGKDVELGFHVDDSEVTLNVCLGKDFLGGELYFRGARCE KHVNIMTHPEEIGDYIHRAGRAVLHRGRHRHGARATTSGHRLNLILWCRRELKKYKTDFSSWCGECLRRKKERQRMTIASTKMVTTLFKSFSFIRHLNSQ VPMSKYPSFLAGTVEAGRYFFYILKPLYARLSPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10035445 [exp]	0	1
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10031063 [exp]	3.2	0.9196
AT4G01950		ATGPAT3, GPAT3	glycerol-3-phosphate acyltrans...		Lus10001449 [exp]	4.7	0.8804
AT5G18960	FAR1_related	FRS12	FAR1-related sequence 12 (.1)		Lus10023137 [exp]	10.4	0.8127
AT2G02950		PKS1	phytochrome kinase substrate 1...		Lus10024228 [exp]	12.0	0.8507
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10012868 [exp]	12.0	0.8540
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10009959 [exp]	12.6	0.8677
AT1G02790		PGA4	polygalacturonase 4 (.1)		Lus10003782 [exp]	12.6	0.8327
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10034522 [exp]	12.7	0.8404
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Lus10006855 [exp]	13.7	0.8483
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10002374 [exp]	13.7	0.8054

Compare expression of checked genes

Lus10035445 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.