Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23540 769 / 0 ARM repeat superfamily protein (.1) AT2G34357 238 / 4e-64 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031065 [exp] 1969 / 0 AT4G23540 843 / 0.0 ARM repeat superfamily protein (.1) Lus10021944 [exp] 271 / 1e-74 AT2G34357 1194 / 0.0 ARM repeat superfamily protein (.1) Lus10041232 [exp] 74 / 2e-14 AT2G34357 293 / 1e-91 ARM repeat superfamily protein (.1) Lus10041233 [exp] 47 / 3e-05 AT2G34357 81 / 6e-18 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G050000 [exp] 1037 / 0 AT4G23540 927 / 0.0 ARM repeat superfamily protein (.1) Potri.006G137900 [exp] 290 / 7e-81 AT2G34357 1301 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08161 [flax] [poplar] NUC173 NUC173 domain
Representative CDS sequence Show only first row Show all	>Lus10035446 pacid=23170657 polypeptide=Lus10035446 locus=Lus10035446.g ID=Lus10035446.BGIv1.0 annot-version=v1.0 ATGGCGACGCCGGCACCGGAGAAACCAATCAGGCACAAGCGAAGATTCAGCACAATGAAACCGAATGCCAAACGTCAGCGAACAGAGGCAAAGACGACAG CTGACCCGGAACTTGAACCCGACAGCGCATTCCAAGACGACTCTGATCTCTGCCAGCAGCTAATGTCCCGCTACTCAACCTCCACAGCTCCACAACATCA GCACCTCATAGCCACCGCCGCCGCATTCCGGTCTATACTCTCCTCAGAATCCCTTCCTTTAACACCCATGGCTTACTTCCTGGCAGCGATGGAGAATCTG TCCGATTCCGAAGCTCTAGATTCCACTGCCGTTACGGCGCTCTCTTCTTTCGTTTCAATTGTGACGCCTTTGATTCCGGAGAAAGGAGTGCCGAGCGACA AGGCAACGGAGTCCGTTTCTGTGCTGGTGGGAGCGGTTTTGGGGAGGGATGGATTGGGAGTGTCCACTTTGAGTGGCGTGGTGAAGTGTTTGGGTGTCTT GATTGCTAAGTTTTGTGATTTAGAGGATTGGAATTCGGTTGGTGCCGGTTTTCAGAGTTTGCTTCAGTTGTCAGTTGACAAGCGTCCTAAGTTGAGAAGG ACTGCTCAAGACTGTCTAGTGGATGTTCTCAAATCGTTCAATTCTTCTCCTGTTGTTATCAAGGAGGCAAGCAAGTTGGTACTGTCTTTGCTCAAGAGTC ATGCTCCAAGTAATAAAGAAACTGCGGATCAATCTAAGACTGGAACTTCTTCAGATTGTAAACATGTGGAGCTTCTTCATGTATTGAATCTGTTGAAGAT TACTGTTCCACATCTCTCCGACAAGATCAGTTCTAAAATATTAGCAGAGGTAGTCAAGCTTATGGCTTCTCATTTCTTGCCTCATACAAGACACATTTTC CAAATTGTTGAAGTGTTTCTCACGTCTTCACGGGATGACGTTATTGGTCCTTATGTCGAAGGCATCACCGACACTCTTGCTTCTTACGTATTGCTGGGAG AGAAGAATCCTGTGGACACAATACTTTCTGCCGCTATGCTGTTCAAAGTTGCTCTAAATAAGCTTCAGGCCAGAGGTTCATGCTCATGGATGAAAACCTT TCCGAAAATTTTGGGTTGTTTGGAAGGTCTTCAATCTTCCGAAGCTGACACAGCATTTCAAGCTACAGATATCATTAAAGAGTTGATACACAAGGGTCTT GATGTTAAAGTTCTCGGGGCCAACATTAAAAGACAAGTATTTGAAGTAGAAGGAAGCCAGGAGGCAGATATGATGAAAGAATCATGCCTTGTGTTTGAAA ATGCTCTAAGTTCATGTGATGGGGTGCCAAAGGAGCAAATTTTGTTAGTAATATCAGTTTTGTTCCGAAAGCTCGGAGAATTCTCTTTTATCTTCATGAA GGCTGTTGTGCCTAAGCTTGCTGAATTGATGAACCATGCTAATACAGATTCACCGGAAGCAATTTATCTTCAGAGCTGTATTGGTTCAGCAGTTGTTGCC CTAGGTCCAGAGAAGATACTTGGACTTATACCTATCTCCTTTAGTTCTAGCAGTTTGACTTGTTCAAATACCTGGTTGGTGCCCATTCTAAATGATCACA TTGCTGGTGCATCACTAGAGTATTATGTGGACAATATTGTGCCTCTTGCAAAGTCTCTTCAGCGAGCCAGCCAGAAAGTGAAAAAATCAGTACTTCGTCA AGAGCTGAAGGCTCTTGCTCAGGGACTCTTGGAGCTACTCCCTGCCTTCTGTAACCATCCTGTTGATACTCATAGAAGGTTTGAATCTTTGACGGCAATT TTAATTTCTTTTCTCAAGAAGGATCCAAGCATGCACAAAAGTATAGCTGTTTCCTTGAAAGCTCTTGTGAGTCAGAATAGAAGTGCACTTGGCTCTGGAT GCAATGTGGCAGAACTGACTAGCAACGAAAAGAAAGATTTGGATTCAGAGTCCAAAAGCATGACCCCTTATTCAATTAAGATTGCGAACAGAAATATCAA GGCCCTGGCATCGCGTTCCTCTGATCTGCTTCAGACTCTTATTGATACGTTAATCGCTTCATCTCCAGAGAAACGATTGCATTTGAAGGAGGCTATAGGA TGGTTAGCTTCTATTACCAAATCATCCATAACCCAACAGCTATTTTCATTGCGGCTTGAGAAGCTTAAGCTTGTCAACACTGCTGGTGAATTCGAGAAGC CAGCAAGTCTTATTGATGAACAGGCTACTGAAGGGCAAAACAGTCCAACTGAGTTGGAGAACTTAGAAAGGAGTGTAATAATGGAGCTTGCATCTTGTCT TGTTGAGGGAGCCAACGAGGATCTTATTCAGCTGACGTATAACTTCATCACTTACTTATTGGAGGAAACTAAAATGCCCGGACACTGTGAAGCCTATTGC AGTTTGAGTAAAATTTTAGAGCATCATGCTTGGTTTTGTTCTGCACGCTCTGCAGAGCTGATTGGCATATTAATTAGCTTGAAGGCGCCTGTAGATATTG CAACACTCAAATATAGATTTAGTTGCTTCCACTTCCTTCTCGTTCATACCTTAGAGAAGCCGGAACAGGAGGAGGATGAACAGGAGGGGGATAATGCGAG GACATTTCTTATGCTAAATGAAATCATACTGACTTTGAAGGATGGGAAAGATGAAGCAAGGGGAGTCGCTTCTGATATGCTTGTTACGCTAAGTTCTGTT TTGAAGAAGTCATCTCAAGACAGATCTGGCAAACAGTACCACAAGCTGATAAGCATGATACTGGGCTACCTATCTGGCTCATCGGCACACATAAAGAGTG GAGCTGTATCTGCACTGTCAGTTCTTGTGTACAATGACTCGGATATTTGTTTGGAGGTACCCGACCTCGTGCCTGATGTCCTGTCTTTGCTGCAAAATAA AGATCTTGAAGTAGCTAAAGCTGCGTTGGGGTTTTTGAAAGTAATGGTATCTTGCTTGGAATCCAAGGATCTTCTGAGCCTTCAAGCCGACATCTTGAAC GAAATTCTTCCTTGGTCGTCTGTTTCACGAAATCACTTGAGATCCAAGGTGACAGTCATTCTGGAGATTTTGTTGCGGAAGTGTGGCTCTGCGGCAGTTC AATCAGTCACACCGGATAAGTATAGGAACTTTGTCAAGACTGTCCTGCAGAATCGTCATGAGAGGTCAGATTCCAAGGATACGGGCGCTAAGGATGACAA TACAAAGATGAACGACTCATCTTCCGAGAAGAAGGTGCTGAAAGATGAGGAAGGAGGTGGAGGGCATAGAGGAGGTCCACCAAGCGGAAAGAGGAAGTGG GAGAACAGTAACCCACCAAATGAGAGGAAGGGTGGACAAAGAGATAATAAGAGGCCGAGGCAGCAGCAGCAGCATCATTCGTCAAAACCTGCATTCGGAA GGAAGAAAGGGAATTTCGGGCAGGATCGACATGCTCGAAAACATGGCGGTGGTGGTCGGACTGGGAAGAGGTAA
AA sequence Show only first row Show all	>Lus10035446 pacid=23170657 polypeptide=Lus10035446 locus=Lus10035446.g ID=Lus10035446.BGIv1.0 annot-version=v1.0 MATPAPEKPIRHKRRFSTMKPNAKRQRTEAKTTADPELEPDSAFQDDSDLCQQLMSRYSTSTAPQHQHLIATAAAFRSILSSESLPLTPMAYFLAAMENL SDSEALDSTAVTALSSFVSIVTPLIPEKGVPSDKATESVSVLVGAVLGRDGLGVSTLSGVVKCLGVLIAKFCDLEDWNSVGAGFQSLLQLSVDKRPKLRR TAQDCLVDVLKSFNSSPVVIKEASKLVLSLLKSHAPSNKETADQSKTGTSSDCKHVELLHVLNLLKITVPHLSDKISSKILAEVVKLMASHFLPHTRHIF QIVEVFLTSSRDDVIGPYVEGITDTLASYVLLGEKNPVDTILSAAMLFKVALNKLQARGSCSWMKTFPKILGCLEGLQSSEADTAFQATDIIKELIHKGL DVKVLGANIKRQVFEVEGSQEADMMKESCLVFENALSSCDGVPKEQILLVISVLFRKLGEFSFIFMKAVVPKLAELMNHANTDSPEAIYLQSCIGSAVVA LGPEKILGLIPISFSSSSLTCSNTWLVPILNDHIAGASLEYYVDNIVPLAKSLQRASQKVKKSVLRQELKALAQGLLELLPAFCNHPVDTHRRFESLTAI LISFLKKDPSMHKSIAVSLKALVSQNRSALGSGCNVAELTSNEKKDLDSESKSMTPYSIKIANRNIKALASRSSDLLQTLIDTLIASSPEKRLHLKEAIG WLASITKSSITQQLFSLRLEKLKLVNTAGEFEKPASLIDEQATEGQNSPTELENLERSVIMELASCLVEGANEDLIQLTYNFITYLLEETKMPGHCEAYC SLSKILEHHAWFCSARSAELIGILISLKAPVDIATLKYRFSCFHFLLVHTLEKPEQEEDEQEGDNARTFLMLNEIILTLKDGKDEARGVASDMLVTLSSV LKKSSQDRSGKQYHKLISMILGYLSGSSAHIKSGAVSALSVLVYNDSDICLEVPDLVPDVLSLLQNKDLEVAKAALGFLKVMVSCLESKDLLSLQADILN EILPWSSVSRNHLRSKVTVILEILLRKCGSAAVQSVTPDKYRNFVKTVLQNRHERSDSKDTGAKDDNTKMNDSSSEKKVLKDEEGGGGHRGGPPSGKRKW ENSNPPNERKGGQRDNKRPRQQQQHHSSKPAFGRKKGNFGQDRHARKHGGGGRTGKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23540			ARM repeat superfamily protein...		Lus10035446 [exp]	0	1
AT5G51660		CPSF160, ATCPSF...	cleavage and polyadenylation s...		Lus10031692 [exp]	2.0	0.9593
AT5G05560		EMB2771, APC1	EMBRYO DEFECTIVE 2771, E3 ubiq...		Lus10007498 [exp]	2.8	0.9568
AT4G17610			tRNA/rRNA methyltransferase (S...		Lus10011019 [exp]	3.7	0.9448
AT2G31340		EMB1381	embryo defective 1381 (.1)		Lus10035336 [exp]	4.1	0.9244
AT2G05120			Nucleoporin, Nup133/Nup155-lik...		Lus10001170 [exp]	5.2	0.9563
AT5G51660		CPSF160, ATCPSF...	cleavage and polyadenylation s...		Lus10031111 [exp]	5.7	0.9540
AT3G11964			RNA binding;RNA binding (.1)		Lus10029327 [exp]	6.9	0.9478
AT5G48120			ARM repeat superfamily protein...		Lus10011436 [exp]	8.0	0.9247
AT3G23330			Tetratricopeptide repeat (TPR)...		Lus10024381 [exp]	8.0	0.9111
AT2G21440			RNA-binding (RRM/RBD/RNP motif...		Lus10022044 [exp]	8.0	0.9353

Compare expression of checked genes

Lus10035446 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.