Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41740 1295 / 0 ATVLN2, VLN2 villin 2 (.1) AT3G57410 1261 / 0 ATVLN3, VLN3 villin 3 (.1) AT4G30160 840 / 0 ATVLN4, VLN4 villin 4 (.1.2) AT5G57320 780 / 0 VLN5 villin 5, villin, putative (.1) AT2G29890 583 / 0 ATVLN1, VLN1 villin 1, villin-like 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031066 [exp] 1712 / 0 AT2G41740 1320 / 0.0 villin 2 (.1) Lus10015333 [exp] 795 / 0 AT4G30160 1395 / 0.0 villin 4 (.1.2) Lus10005861 [exp] 601 / 0 AT2G29890 1049 / 0.0 villin 1, villin-like 1 (.1.2.3) Lus10025461 [exp] 381 / 4e-118 AT4G30160 959 / 0.0 villin 4 (.1.2) Lus10015332 [exp] 79 / 1e-17 AT4G30160 100 / 4e-26 villin 4 (.1.2) Lus10015334 [exp] 71 / 2e-14 AT4G30160 132 / 3e-37 villin 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G050200 [exp] 1424 / 0 AT2G41740 1340 / 0.0 villin 2 (.1) Potri.016G056200 [exp] 1283 / 0 AT2G41740 1248 / 0.0 villin 2 (.1) Potri.006G165300 [exp] 830 / 0 AT4G30160 1507 / 0.0 villin 4 (.1.2) Potri.018G089700 [exp] 783 / 0 AT4G30160 1464 / 0.0 villin 4 (.1.2) Potri.009G045000 [exp] 610 / 0 AT2G29890 1101 / 0.0 villin 1, villin-like 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0092 [flax] [poplar] ADF PF00626 [flax] [poplar] Gelsolin Gelsolin repeat CL0092 [flax] [poplar] PF02209 [flax] [poplar] VHP Villin headpiece domain
Representative CDS sequence Show only first row Show all	>Lus10035450 pacid=23170524 polypeptide=Lus10035450 locus=Lus10035450.g ID=Lus10035450.BGIv1.0 annot-version=v1.0 ATGTCTAGCGCTGCAAAAGTTTTAGATCCTGCATTCCAAGGAGTGGGGCAGAAACCTGGGACTGAGATATGGCGGATTGAGAATTTTCAACCTACTGTAG TGCCAAAGTCAGAACATGGAAAATTCTACATGGGGGATAGTTACATTATCCTTCAGACAACCCAAACGAAAGGAGGATCGTACTTGTATGACATTCACTT CTGGATTGGGAAGGACACTAGTCAGGATGAAGCTGGAGCAGCGGCTATTAAAACTGTCGAACTTGATGCAGCTCTTGGAGGACGTGCTGTGCAGCACAGG GAACTTCAAGGGCATGAATCTGACCAGTTCTTATCTTTTTTTAAACCTTGTATTATACCATTAGAAGGAGGTGTTGCATCTGGCTTCAAGCATGCTGAGG CAGAAGCGTTTGAGACACGGTTGTATGTCTGTAAAGGCAAACGGGTAGTCAGAATGAAACAGGTTCCATTTGCAAGGTCATCTCTGAATCATGATGATGT GTTTATCCTGGACACTGAGAAGAAGATATATCAGTTCAATGGTGCAAATTCCAATATCCAAGAAAGGGCAAAGTCTCTAGAAGTTGTACAGTTCTTGAAA GATAAGTATCATGAGGGAACGTGTGATGTTGCAATTGTTGATGATGGAAAGTTGGATACTGAATCAGACTCAGGGGAGTTCTGGGTCCTTTTTGGTGGTT TTGCCCCGATTGGGAAGAAGGTCCTCACTGATGACGACATTGTCGCAGAGCCGAGTCCTGCTAAATTATACAGCATTAATGGAGGTGAGGTTACTGCTGT TGAGGGCGAACTATCGAAAGGCATGTTGGAAAATAACAAATGTTATCTTCTGGATCGTGGCAATGAGGTGTTTATTTGGGTTGGCCGTACAACCCAAGTG GACGAGAGGAAAGAAGTTGGCAAAGCGGCAGAGGATTTTATTGCCAGCGAGAACAGGCCAAAATCTGTTCATATAACCCGAGTTATTCAAGGTTATGAGA CACATTCATTCAAGTCAAATTTTAGTTCTTGGCCTGCTGGGTCTGCAGCTCCTGGTGCTGAAGAGGGACGAGGAAAAGTAGCAGCTTTGCTGAAGCAACA AGGCATGGGTCTCAAAGGTGCATCGAAAAGTGCTCCTGTAACCGAGGAGGTCCCTCCTTTGCTTGAAGGAGGCGGGAAACTGGAGGTCTGGTGTATCAAT GGCAGTGCCAAAACTCCAGTGCCGAAGGAAGATATTGGTAAATTTTATGCTGGAGACTGCTATATTGTTCTATATACCTATCATTCTGGTGATAGAAAAG AAGACTACTATCTCTGCTGTTGGTTTGGGAAGAATAGCATTGAGGCGGATCAGCAGATGGCTACTCGATTGGCTAACACAATGTCGAACTCACTGAAAGG CAGACCTGTTCTGGGACGCATATTCCAAGGCAAGGAGCCACCGCAGTTCATTGCTATTTTCCAGCCTATGTTAGTCCTCAAGGGTGGTTTGAGCTCTGGC TACAAAAAATACATAGAAGAGAAAGAACTGGCAGATGACACGTACACTGCTGATTCGGTGGCCCTCTTGCGTGTATCTGGAACTGCTGCACACAACAATA AGGCAGAGCAAGTAGATGCGGTGGCAAACTCCTTGAATTCCACAGAGTGTTTTCTCCTGCAATCCGGCTCCTCAGTTTTCACTTGGCATGGGAATCAGAG TGCTTTTGAACAACAGCAGCTGGCAGCAAAAGTTGCTGAATTCCTGAAACCTGGAGCAACGCTGAAACATGCTAAAGAAGGAACTGAAAGCTCAGCTTTC TGGTTCCCTCTTGGAGGGAAACAAAGTTACAATAGCAAAAAGGTGTCTCCAGAAACTGCCAGAGAACCTCACCTATTCTCTGTCTCTCTAAATAAAGGAA AATTTCAGGTTGAGGAAGTGTACAACTTTTGTCAAGATGACCTGTTGACAGAGGACATATTGATACTTGATACAAGAGCTGAAGTTTTCATATGGGTCGG CCAATCTACAGACCCCAAAGAAAAGCAAAGTGCTTTCGATATTGGCCAGCAATATATAGCGATGGCTGCAGCTCTCGAGGGTTTGTCAGTGAATGTGCCA TTGTATAAAGTTACTGAAGGAAATGAGCCATCATTCTTCACGACATACTTCTCATGGGATTCCACAAAAGCCACTGCTCAAGGAAACTCATTCCAGAAGA AGATGTCATTACTCTTTGGTATAGGACATCATGAGGATAAGTCCAATGGGAACCAAGGAGGAGCAACCCAGAGGGCTTCTGCTTTAGCTGCCTTGAATTC TGCATTTAACCCATCCTCTGGAAAGTCATCTCCTCGAAGCCAGGAGAGGAACAGTAATCAAGGTGGTCCGACTCAAAGAGCGTCAGCTTTGGCTGCTTTG AACAATGCTTTTAATTCGTCGTCGCCTACTGCCAAAACTAGTCCAAGGCCATCATCAGCTGGAACCCAGAGGGCTGCAGCTGTAGCTGCACTTTCCCAAG TTCTTACTGCTGAGAAGAAGATAACACCTGAGGGCACCCCTTCTCAAAGCCCCAGTGCTGAAACTAAAACTTCTGCTGAAGGAAAGACTGAAAATGAAGT GTCCGAAGCAGAAGGGTCAGAAGAAGCTGCTGCAGAACCAAAGGAAGCTGAAGACACTGGATCTGCGGGTGGCGATTCTGAACCAAAATCAGAGTTCGAG CTGGCTGACAGCGACATCGGTCAGGTTATATACAGTTACGATCAGCTGAAGGCTCGCTCTGAGAATCCTGTGACTGGGATAGATTTCAAGCGGAGAGAGG CATACCTGGCACCAGAAGAATTCCAGACAATATTTGGGATGGAGAAAGAAGCATTCTACAAGCTGCCCAAGTGGAAGCAGGACATCCAGAAGAAGAAAGT TGATTTGTTTTAA
AA sequence Show only first row Show all	>Lus10035450 pacid=23170524 polypeptide=Lus10035450 locus=Lus10035450.g ID=Lus10035450.BGIv1.0 annot-version=v1.0 MSSAAKVLDPAFQGVGQKPGTEIWRIENFQPTVVPKSEHGKFYMGDSYIILQTTQTKGGSYLYDIHFWIGKDTSQDEAGAAAIKTVELDAALGGRAVQHR ELQGHESDQFLSFFKPCIIPLEGGVASGFKHAEAEAFETRLYVCKGKRVVRMKQVPFARSSLNHDDVFILDTEKKIYQFNGANSNIQERAKSLEVVQFLK DKYHEGTCDVAIVDDGKLDTESDSGEFWVLFGGFAPIGKKVLTDDDIVAEPSPAKLYSINGGEVTAVEGELSKGMLENNKCYLLDRGNEVFIWVGRTTQV DERKEVGKAAEDFIASENRPKSVHITRVIQGYETHSFKSNFSSWPAGSAAPGAEEGRGKVAALLKQQGMGLKGASKSAPVTEEVPPLLEGGGKLEVWCIN GSAKTPVPKEDIGKFYAGDCYIVLYTYHSGDRKEDYYLCCWFGKNSIEADQQMATRLANTMSNSLKGRPVLGRIFQGKEPPQFIAIFQPMLVLKGGLSSG YKKYIEEKELADDTYTADSVALLRVSGTAAHNNKAEQVDAVANSLNSTECFLLQSGSSVFTWHGNQSAFEQQQLAAKVAEFLKPGATLKHAKEGTESSAF WFPLGGKQSYNSKKVSPETAREPHLFSVSLNKGKFQVEEVYNFCQDDLLTEDILILDTRAEVFIWVGQSTDPKEKQSAFDIGQQYIAMAAALEGLSVNVP LYKVTEGNEPSFFTTYFSWDSTKATAQGNSFQKKMSLLFGIGHHEDKSNGNQGGATQRASALAALNSAFNPSSGKSSPRSQERNSNQGGPTQRASALAAL NNAFNSSSPTAKTSPRPSSAGTQRAAAVAALSQVLTAEKKITPEGTPSQSPSAETKTSAEGKTENEVSEAEGSEEAAAEPKEAEDTGSAGGDSEPKSEFE LADSDIGQVIYSYDQLKARSENPVTGIDFKRREAYLAPEEFQTIFGMEKEAFYKLPKWKQDIQKKKVDLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41740		ATVLN2, VLN2	villin 2 (.1)		Lus10035450 [exp]	0	1
AT2G41740		ATVLN2, VLN2	villin 2 (.1)		Lus10031066 [exp]	1.0	0.9634
AT3G17900			unknown protein		Lus10030797 [exp]	3.5	0.8845
AT3G01780		TPLATE	ARM repeat superfamily protein...		Lus10014599 [exp]	4.9	0.8991
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Lus10017160 [exp]	4.9	0.8821
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Lus10021570 [exp]	5.3	0.8832
AT5G45160			Root hair defective 3 GTP-bind...		Lus10018282 [exp]	6.7	0.8912
AT1G60070			Adaptor protein complex AP-1, ...		Lus10012988 [exp]	6.8	0.9086
AT5G22780			Adaptor protein complex AP-2, ...		Lus10019520 [exp]	7.3	0.8803
AT1G49040		SCD1	STOMATAL CYTOKINESIS-DEFECTIVE...		Lus10040449 [exp]	7.5	0.8918
AT3G51460		rhd4	ROOT HAIR DEFECTIVE4, Phosphoi...		Lus10016697 [exp]	8.7	0.8490

Compare expression of checked genes

Lus10035450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.