Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41810 452 / 2e-159 Protein of unknown function, DUF642 (.1) AT2G41800 432 / 2e-151 Protein of unknown function, DUF642 (.1) AT3G08030 411 / 5e-143 Protein of unknown function, DUF642 (.1.2) AT4G32460 351 / 2e-119 Protein of unknown function, DUF642 (.1.2) AT5G11420 346 / 2e-117 Protein of unknown function, DUF642 (.1) AT5G25460 340 / 6e-115 Protein of unknown function, DUF642 (.1) AT1G80240 335 / 4e-113 Protein of unknown function, DUF642 (.1) AT2G34510 282 / 4e-92 Protein of unknown function, DUF642 (.1) AT1G29980 280 / 5e-91 Protein of unknown function, DUF642 (.1.2) AT5G14150 124 / 8e-32 Protein of unknown function, DUF642 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031067 [exp] 642 / 0 AT2G41810 478 / 1e-169 Protein of unknown function, DUF642 (.1) Lus10039602 [exp] 432 / 2e-151 AT3G08030 530 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10029501 [exp] 432 / 5e-151 AT3G08030 537 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10016394 [exp] 374 / 4e-128 AT3G08030 469 / 2e-166 Protein of unknown function, DUF642 (.1.2) Lus10016393 [exp] 369 / 3e-126 AT3G08030 490 / 1e-174 Protein of unknown function, DUF642 (.1.2) Lus10029503 [exp] 367 / 4e-126 AT3G08030 465 / 4e-166 Protein of unknown function, DUF642 (.1.2) Lus10029502 [exp] 367 / 2e-125 AT3G08030 475 / 1e-168 Protein of unknown function, DUF642 (.1.2) Lus10005474 [exp] 356 / 4e-121 AT5G11420 581 / 0.0 Protein of unknown function, DUF642 (.1) Lus10013112 [exp] 355 / 5e-121 AT5G11420 606 / 0.0 Protein of unknown function, DUF642 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G050300 [exp] 493 / 3e-175 AT2G41810 530 / 0.0 Protein of unknown function, DUF642 (.1) Potri.016G056100 [exp] 486 / 2e-172 AT2G41810 520 / 0.0 Protein of unknown function, DUF642 (.1) Potri.006G050400 [exp] 480 / 3e-170 AT2G41810 521 / 0.0 Protein of unknown function, DUF642 (.1) Potri.001G263900 [exp] 426 / 8e-149 AT3G08030 515 / 0.0 Protein of unknown function, DUF642 (.1.2) Potri.009G058800 [exp] 422 / 2e-147 AT3G08030 498 / 9e-178 Protein of unknown function, DUF642 (.1.2) Potri.006G250100 [exp] 359 / 8e-123 AT5G11420 598 / 0.0 Protein of unknown function, DUF642 (.1) Potri.018G031100 [exp] 353 / 3e-119 AT5G11420 600 / 0.0 Protein of unknown function, DUF642 (.1) Potri.003G059800 [exp] 333 / 6e-112 AT5G25460 513 / 0.0 Protein of unknown function, DUF642 (.1) Potri.001G174400 [exp] 327 / 1e-109 AT5G25460 507 / 0.0 Protein of unknown function, DUF642 (.1) Potri.011G087500 [exp] 291 / 1e-95 AT1G29980 578 / 0.0 Protein of unknown function, DUF642 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF04862 [flax] [poplar] DUF642 Protein of unknown function (DUF642)
Representative CDS sequence Show only first row Show all	>Lus10035451 pacid=23170595 polypeptide=Lus10035451 locus=Lus10035451.g ID=Lus10035451.BGIv1.0 annot-version=v1.0 ATGGCTTTCCCCTTGCCTTTCCTCTGCCTCTTCTCACTACTCATCCTCCTCTTCATCACCGCCGCATCCTCCGCTCCTTCTCCTCCCCCGCCTCTCGACG GGCTAGTTCCTAATGGCGACTTCGAGCAACCACCGCCGAAATCCAAGCTCAACAAAACAGCCATCATAGGCAAACACTCCCTCCCCAGCTGGAAAACTAC GGGCCTCGTCGAGTACGTCTCGGCCGGCCCGCAGCCCGGCGGGTTCTACTTCGCCGTCCCTAGAGGTGTCCACGCCGTCAGGCTCGGAAACAGAGCCACC ATTTCCCAAACCCTCGACCTCAACAAAGCCAGTAACAAAAGTACTGCTTCGTCGTCGTCGTCGGTCTACAGCTTGACATTCGGAGCAACCAAGACCTGCG CTCAGGATGAGGTTCTGAGGGTGACGGTGGCGAATGGTGGTACTGGTGGTGTAGTTTACTCTGCCTCTGATCTGCCACTACAGACGCTGTACAGCAGTGA CGGCGGCGACACTTATGCGGTGGCGTTTACAGTTGGCGGCGGTGTGGAGAGTGTGAGGGTTAGCTTTTATAACCCAGGTGTTCAGGAAGATCCTGCATGT GGTCCTCTTTTGGATGCTGTGGCCATCAAGCATATCCCTCCTCTTTCCTACTCTCCAGGAAACCTAGTGAAGAACGGAGGATTCGAAACAGGGCCGCACG TGTTCAAGAACTTGTCAACGGGAGTACTCCTCCCACCAAAAGCCATGGACAAAACCTCCCCGCTCCCCGGATGGATCGTCGAGTCCCTCAAACCGGTCAA GTACATCGACAGCACCCACTTCTCCGTCCCGTCGGGACTCGCCGCCGTTGAGCTGGTCGCCGGGAGGGAAAGCGCCATCGCCCAGGTCATCAGAACAATC CCGGGAAAGACCTACAAGCTGACATTCTCCATCGGGGACGCTAAGAACGGGTGCCACGGATCCATGATGGTGGAGGCATTTGCCTCCGACAAAACCGTTA GAGTTCCGTTTGTCTCTGTCGGGAAAGGCAGGTTCAAAGCTGCCAACTTGGTGTTCCAGGCTCAGTCGGAGAGGACTCGGGTCACTTTCTATAGCGGGTA TTATCATACAAAGCTGAATGACTATGGTCACCTTTGTGGGCCCGTCTTAGATGATGTGAAGGTGGTCTTGGTGATGAGTTGA
AA sequence Show only first row Show all	>Lus10035451 pacid=23170595 polypeptide=Lus10035451 locus=Lus10035451.g ID=Lus10035451.BGIv1.0 annot-version=v1.0 MAFPLPFLCLFSLLILLFITAASSAPSPPPPLDGLVPNGDFEQPPPKSKLNKTAIIGKHSLPSWKTTGLVEYVSAGPQPGGFYFAVPRGVHAVRLGNRAT ISQTLDLNKASNKSTASSSSSVYSLTFGATKTCAQDEVLRVTVANGGTGGVVYSASDLPLQTLYSSDGGDTYAVAFTVGGGVESVRVSFYNPGVQEDPAC GPLLDAVAIKHIPPLSYSPGNLVKNGGFETGPHVFKNLSTGVLLPPKAMDKTSPLPGWIVESLKPVKYIDSTHFSVPSGLAAVELVAGRESAIAQVIRTI PGKTYKLTFSIGDAKNGCHGSMMVEAFASDKTVRVPFVSVGKGRFKAANLVFQAQSERTRVTFYSGYYHTKLNDYGHLCGPVLDDVKVVLVMS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41810			Protein of unknown function, D...		Lus10035451 [exp]	0	1
AT5G10760			Eukaryotic aspartyl protease f...		Lus10026905 [exp]	5.5	0.8272
AT1G77400			unknown protein		Lus10042737 [exp]	5.6	0.7204
AT5G62350			Plant invertase/pectin methyle...		Lus10031713 [exp]	7.3	0.7992
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Lus10027580 [exp]	8.4	0.8246
AT1G24140			Matrixin family protein (.1)		Lus10035221 [exp]	9.8	0.8236
AT5G10770			Eukaryotic aspartyl protease f...		Lus10020099 [exp]	13.4	0.8229
AT5G10770			Eukaryotic aspartyl protease f...		Lus10000265 [exp]	13.9	0.8156
AT1G10340			Ankyrin repeat family protein ...		Lus10038608 [exp]	16.7	0.8034
AT1G44750		ATPUP11	purine permease 11 (.1.2.3)		Lus10043350 [exp]	18.8	0.7181
AT3G45230			hydroxyproline-rich glycoprote...		Lus10021479 [exp]	19.6	0.8053

Compare expression of checked genes

Lus10035451 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.