Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67940 372 / 1e-130 ABCI17, AtSTAR1, ATNAP3 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 3, ATP-binding cassette I17, non-intrinsic ABC protein 3 (.1) AT5G46540 135 / 3e-35 ABCB7, PGP7 ATP-binding cassette B7, P-glycoprotein 7 (.1) AT1G27940 132 / 2e-34 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1) AT3G28415 131 / 4e-34 ABCB22 ATP-binding cassette B22, ABC transporter family protein (.1) AT4G25960 131 / 4e-34 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1) AT1G10680 129 / 2e-33 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT4G18050 129 / 4e-33 ABCB9, PGP9 ATP-binding cassette B9, P-glycoprotein 9 (.1) AT3G28380 127 / 8e-33 ABCB17, PGP17 ATP-binding cassette B17, P-glycoprotein 17 (.1) AT1G28010 127 / 1e-32 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT3G28390 125 / 7e-32 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031069 [exp] 326 / 4e-114 AT1G67940 268 / 9e-92 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 3, ATP-binding cassette I17, non-intrinsic ABC protein 3 (.1) Lus10024162 [exp] 141 / 2e-37 AT3G28345 1280 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10036616 [exp] 134 / 2e-36 AT3G28345 479 / 6e-159 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10039533 [exp] 138 / 3e-36 AT3G28345 1288 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10035834 [exp] 134 / 7e-35 AT3G28345 1271 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10009989 [exp] 132 / 3e-34 AT2G47000 1754 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10004571 [exp] 132 / 3e-34 AT4G25960 1732 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Lus10000910 [exp] 130 / 8e-34 AT4G25960 808 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Lus10032911 [exp] 130 / 1e-33 AT3G28860 960 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G132000 [exp] 393 / 8e-139 AT1G67940 390 / 3e-138 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 3, ATP-binding cassette I17, non-intrinsic ABC protein 3 (.1) Potri.001G417600 [exp] 134 / 5e-35 AT3G28345 1241 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.001G139600 [exp] 134 / 5e-35 AT4G25960 1962 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.001G139700 [exp] 134 / 6e-35 AT4G25960 1875 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.002G019600 [exp] 132 / 2e-34 AT1G27940 1654 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Potri.003G094400 [exp] 130 / 1e-33 AT4G25960 2000 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.001G354900 [exp] 129 / 2e-33 AT4G18050 1723 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1) Potri.011G133800 [exp] 129 / 3e-33 AT3G28345 1268 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.018G141400 [exp] 129 / 3e-33 AT3G28345 1204 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G074000 [exp] 128 / 5e-33 AT3G28345 1831 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10035453 pacid=23170606 polypeptide=Lus10035453 locus=Lus10035453.g ID=Lus10035453.BGIv1.0 annot-version=v1.0 ATGGCCGCCACTACCGCTCCTTCTTCAGGTACGATTCGCCGATCCCTAATCAACTTCTACCTTTTTTTTCTCTCTCAACGCCATCCCGAATATTTTCTTT TTCCAGACAACGGCGGGATTCACGAGCAATTTTTACGAGCCGACTTGGCAGACGTAGAATCCGGCAATCACGGCGGACCCAAGTTCCAGATCCGCAACTT GACCAAGACATCTGATGCCGGCGAGCCGATCCTCCGCGGCATCGACATGGAAATCCCTAGCGCACAAATCGTAGGCATAATCGGACCAAGCGGCAGCGGC AAATCAACTCTCCTCAGATCCCTCAACCGCCTCTGGGAGCCTCCGTCATCCACTGTCTTCCTCGACGGCCGAGACATCACGGACATGGACGTCCTCTCCC TCCGCCGTAAAGTCGGGATGCTATTCCAGCTCCCGGCGCTCTTCCAAGGAACGGTAGCCGATAACGTCCGGTACGGACCGCAACTGAGAGGGAAGAGGAT ATCGGACAAGGAGGTCTATAACCTCCTGGCGATGGCGGATCTGGACTCATCGTTTTACAGCAAGACCGGGAGCGAGCTTTCCGTCGGGCAGCAGCAGAGG GTGGCTCTGGCTAGGACGCTGGCGAACGAGCCAGAGGTGCTGCTGCTGGACGAGCCGACGAGCGCTCTGGATCCGATCTCGACGCAGAACGTGGAGGATG TCTTGGTTAAGCTGAAGAAGGATCGTGGGATGACTGTCGTGATGGTTTCCCACAGCGTGAAGCAGATCCAGAGGGTAGCCGATTTAGTGTTATTGCTTGT CGATGGCGAGATTGTGGAGGTTGTTACGCCGGAGAAGCTCTGTGAAGCTAAGCATCCCATGGCTGTCAGGTTTCTTCAGCTCAGTTCTTGA
AA sequence Show only first row Show all	>Lus10035453 pacid=23170606 polypeptide=Lus10035453 locus=Lus10035453.g ID=Lus10035453.BGIv1.0 annot-version=v1.0 MAATTAPSSGTIRRSLINFYLFFLSQRHPEYFLFPDNGGIHEQFLRADLADVESGNHGGPKFQIRNLTKTSDAGEPILRGIDMEIPSAQIVGIIGPSGSG KSTLLRSLNRLWEPPSSTVFLDGRDITDMDVLSLRRKVGMLFQLPALFQGTVADNVRYGPQLRGKRISDKEVYNLLAMADLDSSFYSKTGSELSVGQQQR VALARTLANEPEVLLLDEPTSALDPISTQNVEDVLVKLKKDRGMTVVMVSHSVKQIQRVADLVLLLVDGEIVEVVTPEKLCEAKHPMAVRFLQLSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67940		ABCI17, AtSTAR1...	ARABIDOPSIS THALIANA NON-INTRI...		Lus10035453 [exp]	0	1
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10033718 [exp]	4.4	0.9086
AT5G38200			Class I glutamine amidotransfe...		Lus10039726 [exp]	5.2	0.8752
AT5G36930			Disease resistance protein (TI...		Lus10002247 [exp]	8.8	0.8787
AT4G11170			Disease resistance protein (TI...		Lus10006732 [exp]	16.5	0.8233
AT4G36520			Chaperone DnaJ-domain superfam...		Lus10007394 [exp]	20.5	0.8831
AT5G36930			Disease resistance protein (TI...		Lus10000153 [exp]	25.0	0.8541
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10018748 [exp]	29.3	0.8029
AT5G01950			Leucine-rich repeat protein ki...		Lus10035605 [exp]	30.0	0.8835
AT4G24000		ATCSLG2	ARABIDOPSIS THALIANA CELLULOSE...		Lus10032416 [exp]	40.7	0.8532
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10041645 [exp]	47.6	0.8497

Compare expression of checked genes

Lus10035453 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.