Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60440 124 / 4e-34 MADS AGL62 AGAMOUS-like 62 (.1) AT2G24840 117 / 1e-31 MADS DIA, AGL61 DIANA, AGAMOUS-like 61 (.1) AT4G36590 101 / 7e-26 MADS MADS-box transcription factor family protein (.1) AT1G01530 98 / 2e-24 MADS AGL28 AGAMOUS-like 28 (.1) AT2G34440 84 / 1e-19 MADS AGL29 AGAMOUS-like 29 (.1) AT1G65360 82 / 7e-19 MADS AGL23 AGAMOUS-like 23 (.1) AT3G66656 81 / 2e-18 MADS AGL91 AGAMOUS-like 91 (.1) AT5G13790 77 / 2e-16 MADS AGL15 AGAMOUS-like 15 (.1) AT5G60910 76 / 2e-16 MADS FUL, AGL8 FRUITFULL, AGAMOUS-like 8 (.1.2) AT5G51870 74 / 5e-16 MADS AGL71 AGAMOUS-like 71 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031073 [exp] 464 / 2e-168 AT5G60440 129 / 5e-36 AGAMOUS-like 62 (.1) Lus10012449 [exp] 125 / 5e-35 AT5G60440 157 / 4e-47 AGAMOUS-like 62 (.1) Lus10020511 [exp] 124 / 2e-34 AT5G60440 162 / 9e-49 AGAMOUS-like 62 (.1) Lus10015271 [exp] 90 / 1e-21 AT2G24840 114 / 6e-31 DIANA, AGAMOUS-like 61 (.1) Lus10030824 [exp] 88 / 2e-21 AT2G24840 124 / 4e-35 DIANA, AGAMOUS-like 61 (.1) Lus10015726 [exp] 89 / 3e-21 AT5G60440 102 / 2e-26 AGAMOUS-like 62 (.1) Lus10030663 [exp] 86 / 2e-20 AT2G24840 122 / 2e-34 DIANA, AGAMOUS-like 61 (.1) Lus10003481 [exp] 84 / 1e-19 AT5G60440 99 / 7e-25 AGAMOUS-like 62 (.1) Lus10037450 [exp] 83 / 4e-19 AT5G60440 101 / 7e-26 AGAMOUS-like 62 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G113800 [exp] 158 / 8e-48 AT5G60440 191 / 4e-60 AGAMOUS-like 62 (.1) Potri.017G047300 [exp] 157 / 3e-47 AT5G60440 185 / 2e-57 AGAMOUS-like 62 (.1) Potri.009G084200 [exp] 137 / 9e-40 AT5G60440 211 / 2e-68 AGAMOUS-like 62 (.1) Potri.004G130900 [exp] 113 / 8e-31 AT3G04100 140 / 5e-42 AGAMOUS-like 57 (.1) Potri.009G084100 [exp] 112 / 2e-30 AT5G60440 163 / 2e-49 AGAMOUS-like 62 (.1) Potri.001G251400 [exp] 112 / 2e-30 AT5G60440 112 / 3e-30 AGAMOUS-like 62 (.1) Potri.009G045900 [exp] 106 / 3e-28 AT3G04100 121 / 2e-34 AGAMOUS-like 57 (.1) Potri.008G041500 [exp] 105 / 1e-27 AT5G60440 147 / 4e-43 AGAMOUS-like 62 (.1) Potri.009G046100 [exp] 100 / 2e-26 AT5G60440 115 / 6e-32 AGAMOUS-like 62 (.1) Potri.004G131100 [exp] 91 / 1e-22 AT2G34440 137 / 2e-41 AGAMOUS-like 29 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10035456 pacid=23170517 polypeptide=Lus10035456 locus=Lus10035456.g ID=Lus10035456.BGIv1.0 annot-version=v1.0 ATGGTGAGGATTGAAAACGATAGCAATAGAATGGTGACCTTCTCAAAGAGGAGGAGTGGTGTTTTCAAGAAGGCGAGTGAGCTCTCTACATTGTGCGGTG CTGAAGTGGCCGTTGTAGTCTTTTCACCTGGTAACCGGGTATTTTCCTTTGGTAATCCCAGTGTCGAAAATATTATGAATTTGTTTTACTCAGGTGGTCG GTTCTCACACCACCAATCTGATATGACTGCTCACATCATCGAGGCTAATCGGAAATTTGAGATTGATGCACTCAACATCAAACTCACCCAGATACTGGAA AACAATGACAAGTGCAAGAAAAGGAGTGAACAGCTGGACAATCTGTTGGCGGTTAACCTAAACAGGAGGACTATTGCCGAGACCCCTATGGATGAACTGA ATCAGGCCCAACTATTCCAGTACAGGGCCGGTCTTGAAACCCTGAAGGCTGGGATCCATATCCAAGCCCAAACAAGGGCCCAAGCTTTCGAAGAAGCTCA GGCCTACTTGGCCCAGAATCAACCTCCGGTTCAACCAGTCTTCATCAATCCGGCACCATTGCCTCCCGTCACTGATCTTCTTCAAGTTGCTCAGCCTCAA TTTGCTGTGAATCCTGCAACTCCCGGGAACTATGAGTTCTATCAGAGATTCGGCAATGAGAATTCCGATTCTGTCCCTGCAGGTGACGGGAATATGATGG TGAATGGGCCTTTTGGGTATGGGCATGCTGGACCTTCTGCTTAA
AA sequence Show only first row Show all	>Lus10035456 pacid=23170517 polypeptide=Lus10035456 locus=Lus10035456.g ID=Lus10035456.BGIv1.0 annot-version=v1.0 MVRIENDSNRMVTFSKRRSGVFKKASELSTLCGAEVAVVVFSPGNRVFSFGNPSVENIMNLFYSGGRFSHHQSDMTAHIIEANRKFEIDALNIKLTQILE NNDKCKKRSEQLDNLLAVNLNRRTIAETPMDELNQAQLFQYRAGLETLKAGIHIQAQTRAQAFEEAQAYLAQNQPPVQPVFINPAPLPPVTDLLQVAQPQ FAVNPATPGNYEFYQRFGNENSDSVPAGDGNMMVNGPFGYGHAGPSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10035456 [exp]	0	1
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10009400 [exp]	1.4	0.9883
AT1G63990		SPO11-2	sporulation 11-2 (.1)		Lus10032302 [exp]	2.0	0.9801
					Lus10006918 [exp]	7.3	0.9766
					Lus10040397 [exp]	8.5	0.9766
AT1G04670			unknown protein		Lus10004041 [exp]	9.5	0.9766
					Lus10007508 [exp]	10.4	0.9766
AT5G60010			ferric reductase-like transmem...		Lus10019390 [exp]	11.2	0.9766
AT3G53690			RING/U-box superfamily protein...		Lus10042610 [exp]	12.0	0.9766
					Lus10027066 [exp]	12.7	0.9766
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011980 [exp]	13.0	0.8859

Compare expression of checked genes

Lus10035456 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.