Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006004 [exp] 44 / 4e-06 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035457 pacid=23170647 polypeptide=Lus10035457 locus=Lus10035457.g ID=Lus10035457.BGIv1.0 annot-version=v1.0 ATGAGGCCAACGAAGGTGGGAGGCGGCAATTCCAAGAAGTTGAGAGGTCCTTGGAGGTTGCCAAAATTTGGGCAGGGGTCGCCGACAGCGAGCCCCCTCT CCAGAGAAGAACGGGGACCAAACTGCAGTCACTTAAAGTTAAGTGACCAAAGTTCCAGATCAATTAGTGTAACAGAGGCAGGTAGAGGGCTTGCTCAATA TTTCTGTCCCAACACGTTTCAGATTGTTGCAAAGAAGTTAATGGAGCATAACTCGATCGTTCGAGCTCCAAAGGATGTACGGTCAGAAGCTACAGACTCA TGGCATCGAGAGAAATCACGCAAGGCAGAATCAGAGATGGCAGCTCTTCATAACAGGTGGGGGTCTAGGATTTACTTTCTTCTTAAACCGTAA
AA sequence Show only first row Show all	>Lus10035457 pacid=23170647 polypeptide=Lus10035457 locus=Lus10035457.g ID=Lus10035457.BGIv1.0 annot-version=v1.0 MRPTKVGGGNSKKLRGPWRLPKFGQGSPTASPLSREERGPNCSHLKLSDQSSRSISVTEAGRGLAQYFCPNTFQIVAKKLMEHNSIVRAPKDVRSEATDS WHREKSRKAESEMAALHNRWGSRIYFLLKP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10035457 [exp]	0	1
AT3G26590			MATE efflux family protein (.1...		Lus10006205 [exp]	1.4	0.8885
					Lus10016100 [exp]	7.7	0.8651
AT2G47490		ATNDT1	NAD+ transporter 1, ARABIDOPSI...		Lus10001463 [exp]	9.4	0.8994
AT1G22430			GroES-like zinc-binding dehydr...		Lus10004786 [exp]	17.9	0.8640
AT3G52740			unknown protein		Lus10020614 [exp]	19.8	0.8674
					Lus10019564 [exp]	26.2	0.8597
					Lus10002411 [exp]	28.5	0.8561
AT5G13825			unknown protein		Lus10000042 [exp]	30.5	0.8533
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10026660 [exp]	32.6	0.8508
AT1G22260		AtZYP1a, ZYP1a	Myosin heavy chain-related pro...		Lus10019419 [exp]	34.4	0.8508

Compare expression of checked genes

Lus10035457 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.