Plant FIBer expression Database

Lus10035458 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G41770 1152 / 0 Protein of unknown function (DUF288) (.1)
AT3G57420 1108 / 0 Protein of unknown function (DUF288) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031076
[exp]
1460 / 0 AT2G41770 1198 / 0.0 Protein of unknown function (DUF288) (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G055700
[exp]
1213 / 0 AT2G41770 1202 / 0.0 Protein of unknown function (DUF288) (.1)
Potri.006G051000
[exp]
1210 / 0 AT2G41770 1199 / 0.0 Protein of unknown function (DUF288) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0110 GT-A PF03385 STELLO STELLO glycosyltransferases
Representative CDS sequence
>Lus10035458 pacid=23170564 polypeptide=Lus10035458 locus=Lus10035458.g ID=Lus10035458.BGIv1.0 annot-version=v1.0
ATGATGGTTCAGAACCGATCTCCGACGTCGCCGCCTGAATCTCCCAAATCAAACTCCAAATCCCATCTTCCAACAACGGTCTTCCACCGCCAAATTCCCT
CCCGCAGATTCTCGCCTTCCAAATCCCTAGACTTCTGCACTTGGTTCTCCGAAAACCTCTACAAGATCGTCACCGTCGCTTTCCTGGTCTTCACCGTCGC
CGCACTCTTCTTCCTCCGTAACGCCGGGGACACCTCAGCTTTCCTCTACCTCCAATCCAAATCTCACTCAATCGAGAAAACCCTCCACCACCCTCAACTC
CCCCACCCTCAAATCGAGTGGAACAAAATCCCACCCCTGAGAGATTCTTCATCGCCTTACGCCAATTTCCGTACGGAGAAGTGGATCGTGGTCTCAGTCT
CCGATTACCCATCCGACTCACTGAAGCAGCTCGTCAAGATCAGAGGATGGCAGCTGCTTGCCGTGGGGGATTCCAGGACGCCTTCTGATTGGTCGTTGAA
AGGTGCAGTATTCTTGTCTTTGGAACAGCAAGCTACTCTGGGGTTTAGGGTTGTTGATTACTTGCCTTATCGCTCCTTTGTGAGGAAGAGTGTGGGTTAT
CTGTTTGCAATTCAACATGGGGCGAAGAAGATCTTTGATGCTGATGATCGTGGAGAAGTGATTGGAGACGATTTAGGGAAGCATTTTGATGTGGATTTGT
CTGGGGAAGGAGCTAGGAATGAGCCTCTTTTACAGTATAGTCATGAGAATGTGAATAGGACTGTAGTGAATCCTTACGTTCATTTTGGGCAGAGATCGGT
TTGGCCTAGAGGGTTGCCATTAGAGAATGTTGGAGAAATTGGGCATGAAGAGTTCTACACTGAAATTTATGGTGGCAAGCAGTTTATACAGCAAGGTATA
TCTAATGGGTTGCCTGATGTTGATTCTGTGTTCTACTTCACTAGGAAAGCTGTGTTGGAGGCTTTCGATGTTAGGTTCGACGATCATGCACCCAAGGTAG
CATTGCCTCAAGGGATGATGGTGCCTGTTAATTCGTTTAATACGATGTACCATTCGCCTGCATTTTGGGGGTTGATGCTTCCTGTTTCAGTAAGTACAAT
GGCGGCTGATGTGCTAAGAGGTTACTGGAGCCAAAGGCTATTGTGGGAGATTGGTGGGTTTGTCGTGGTTTATCCACCTACGGTACATCGATATGATAAG
ATTGAAGGGTACCCGTTCTCGGAGGAGAAAGATCTACACGTTAATGTTGGTAGGCTGATAAAGTTCTTGGTTGCTTGGAGATCGGCCAAGCACAGGTTGT
TTGAGAAGGTTATGGATCTGAGTTTCGCAATGGCGGAGGAAGGGTTTTGGAGTGAGCAAGATGTGAAGTTTACTGCTGCTTGGCTACAGGACTTGGTTGC
TGTTGGCTATCAGCAACCTAGGTTGATGTCATTGGAATTGGATAGGCCGCGGCCAACGATTGGTCATGGGGATCGTAAGGAGTTCATCCCTCGTAAATTG
CCATCTGTCCATCTTGGAGTTGAGGAAACAGGAACAGTTAATTATGAAATTGGTAACTTGATTAGATGGAGGAAGAACTTTGGAAACGTTGTTCTTGTTA
TGTTCTGCAGTGGGCCCGTTGAGCGAACTGCTCTTGAATGGAGATTGCTCTATGGCCGGATATTCAAAACCGTGATTATTTTGTCGGAACAGAAGAATGA
GGATCTTGTTGTTGAAGAAGGCCATCTGGACCAGATGTACAAACTTGTGCCGAAGATATTCAAGCGGTATGGCAGTGCAGAAGGCTTCCTGTTCCTTCAG
GATGATACCATTCTTAATTACTGGAATCTGCATCAAGCTGACAAAGCTAAGTTATGGATCACTGATAAGGTATCTGAGTCTTGGAATAATGTGGAACCCA
GTGGAGAGTGGTTAACCAAGCAAGCCGAAATGGTTAAGCAAGTGGTTGACTCGATGCCAGTCCATTTCCAAGTCAACTATAAGGACGCCGTGAAGAGTGA
GAAGAGCTTACTGCTCTGCAGTTCGGAGATATTCTATGTTCCTCGCCCGTTTGTCAGCGACTTTGTAGACCTTGTTGGTCTTGTGGGTAGTCAGGAGATG
CATCAAAAGGTAGCCATACCAATGTTCTTCGTCTCGATGGATTCGCCTCAGAACTTCGACCCAATCTTAAGCACAATGGTGTATAAACAAACGCCATCGG
TGCCACAGGCAAATTCGACGTTGTATTCCGCTCAAGCACCAGCTGTCCATCCGTGGAGCGTGTCGAGTGAACAAGAGTTCATAAAGCTCGTAAGAATAAT
GGCTGAAGGGGACCCTCTTCTCATGGAGCTTGTTTGA
AA sequence
>Lus10035458 pacid=23170564 polypeptide=Lus10035458 locus=Lus10035458.g ID=Lus10035458.BGIv1.0 annot-version=v1.0
MMVQNRSPTSPPESPKSNSKSHLPTTVFHRQIPSRRFSPSKSLDFCTWFSENLYKIVTVAFLVFTVAALFFLRNAGDTSAFLYLQSKSHSIEKTLHHPQL
PHPQIEWNKIPPLRDSSSPYANFRTEKWIVVSVSDYPSDSLKQLVKIRGWQLLAVGDSRTPSDWSLKGAVFLSLEQQATLGFRVVDYLPYRSFVRKSVGY
LFAIQHGAKKIFDADDRGEVIGDDLGKHFDVDLSGEGARNEPLLQYSHENVNRTVVNPYVHFGQRSVWPRGLPLENVGEIGHEEFYTEIYGGKQFIQQGI
SNGLPDVDSVFYFTRKAVLEAFDVRFDDHAPKVALPQGMMVPVNSFNTMYHSPAFWGLMLPVSVSTMAADVLRGYWSQRLLWEIGGFVVVYPPTVHRYDK
IEGYPFSEEKDLHVNVGRLIKFLVAWRSAKHRLFEKVMDLSFAMAEEGFWSEQDVKFTAAWLQDLVAVGYQQPRLMSLELDRPRPTIGHGDRKEFIPRKL
PSVHLGVEETGTVNYEIGNLIRWRKNFGNVVLVMFCSGPVERTALEWRLLYGRIFKTVIILSEQKNEDLVVEEGHLDQMYKLVPKIFKRYGSAEGFLFLQ
DDTILNYWNLHQADKAKLWITDKVSESWNNVEPSGEWLTKQAEMVKQVVDSMPVHFQVNYKDAVKSEKSLLLCSSEIFYVPRPFVSDFVDLVGLVGSQEM
HQKVAIPMFFVSMDSPQNFDPILSTMVYKQTPSVPQANSTLYSAQAPAVHPWSVSSEQEFIKLVRIMAEGDPLLMELV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G41770 Protein of unknown function (D... Lus10035458
[exp]
0 1
AT2G41770 Protein of unknown function (D... Lus10031076
[exp]
1.0 0.9837
AT1G26570 UGD1, ATUGD1 UDP-glucose dehydrogenase 1 (.... Lus10004656
[exp]
1.4 0.9661
AT2G39220 PLP6, PLAIIB ,P... PATATIN-like protein 6 (.1) Lus10038350
[exp]
2.0 0.9494
AT4G08810 SUB1 calcium ion binding (.1) Lus10013761
[exp]
4.2 0.9503
AT4G17180 O-Glycosyl hydrolases family 1... Lus10039095
[exp]
8.0 0.9231
AT1G17270 O-fucosyltransferase family pr... Lus10037461
[exp]
8.7 0.9466
AT5G49720 TSD1, IRX2, DEC... TUMOROUS SHOOT DEVELOPMENT 1, ... Lus10012162
[exp]
9.2 0.9307
AT3G53520 ATUXS1, UXS1 UDP-glucuronic acid decarboxyl... Lus10025293
[exp]
9.8 0.9351
AT5G15490 UGD3 UDP-glucose dehydrogenase 3, U... Lus10036886
[exp]
10.5 0.9311
AT3G46440 UXS5 UDP-XYL synthase 5 (.1.2) Lus10040847
[exp]
10.6 0.9404

Lus10035458 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.