Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34740 783 / 0 CIA1, ATASE2, ATPURF2, ATD2 CHLOROPLAST IMPORT APPARATUS 1, GLN phosphoribosyl pyrophosphate amidotransferase 2 (.1) AT2G16570 775 / 0 ATASE1, ATASE GLN phosphoribosyl pyrophosphate amidotransferase 1 (.1) AT4G38880 667 / 0 ATASE3 GLN phosphoribosyl pyrophosphate amidotransferase 3 (.1) AT3G24090 55 / 1e-07 glutamine-fructose-6-phosphate transaminase (isomerizing)s;sugar binding;transaminases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042058 [exp] 803 / 0 AT4G34740 826 / 0.0 CHLOROPLAST IMPORT APPARATUS 1, GLN phosphoribosyl pyrophosphate amidotransferase 2 (.1) Lus10018062 [exp] 163 / 1e-47 AT4G34740 196 / 6e-61 CHLOROPLAST IMPORT APPARATUS 1, GLN phosphoribosyl pyrophosphate amidotransferase 2 (.1) Lus10018063 [exp] 162 / 2e-47 AT4G34740 195 / 1e-60 CHLOROPLAST IMPORT APPARATUS 1, GLN phosphoribosyl pyrophosphate amidotransferase 2 (.1) Lus10020198 [exp] 51 / 2e-06 AT3G24090 1157 / 0.0 glutamine-fructose-6-phosphate transaminase (isomerizing)s;sugar binding;transaminases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G164000 [exp] 800 / 0 AT4G34740 891 / 0.0 CHLOROPLAST IMPORT APPARATUS 1, GLN phosphoribosyl pyrophosphate amidotransferase 2 (.1) Potri.009G125600 [exp] 790 / 0 AT4G34740 882 / 0.0 CHLOROPLAST IMPORT APPARATUS 1, GLN phosphoribosyl pyrophosphate amidotransferase 2 (.1) Potri.019G054500 [exp] 60 / 3e-09 AT3G24090 1157 / 0.0 glutamine-fructose-6-phosphate transaminase (isomerizing)s;sugar binding;transaminases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0533 [flax] [poplar] PRTase-like PF00156 [flax] [poplar] Pribosyltran Phosphoribosyl transferase domain CL0052 [flax] [poplar] NTN PF00310 [flax] [poplar] GATase_2 Glutamine amidotransferases class-II
Representative CDS sequence Show only first row Show all	>Lus10035459 pacid=23170658 polypeptide=Lus10035459 locus=Lus10035459.g ID=Lus10035459.BGIv1.0 annot-version=v1.0 ATGTCGACCGCCGCCGCCGCCGCCGCCAACATCTCTTCCATCTCTAAACCCTCCTTCCCCCAGTCGTCAAAATCCCTTTTCTTCCACAAACCCAATCATC TCCTTCCTGCCACTTCAAAGCCCTCCTCGGCCGCCGCCTCCTTCAATCTCTCCTTTTCCCAATCCCACCCATCCCACATCCCTCTCGCTTTTCGTTCCCA AACCTCCAACCCAGACGAACTCGACGACGACAAACCCCGCGAAGAATGCGGAGTCATCGGCGTATACGGCGACCCAGAAGCCTCCCGTCTCTGCTACCTG GGCCTCCACGCCTTGCAGCACCGCGGCCAGGAAGGCGCCGGAATCGTCGCCGTCAAAGACCAGGTATTCCAATCCATAACCGGCGTAGGCTTAGTCACCG ACGTGTTCAACGAATCCAAAATCAACCAATTGCCCGGCGATTTAGCAATCGGCCACGTTAGGTATTCCACCGCCGGTGCCTCCATGCTGAAAAACGTCCA GCCTTTCGTCGCTGGGTACCGATTCGGCTTCGTCGGCGTCGCCCACAACGGAAACCTAGTCAATTACAGGAAGCTAAGAGCCGAACTGGAAGAAACCGGA TCCATCTTCAACACCAGCTCCGATACTGAAGCTGTCCTGCATCTGATCGCCATATCCAAAGCTAGGCCGTTCTTATCTCGAATCGTGGACGCTTGTGAGA AGCTCGAGGGAGCTTATTCAATGGTGTTCGTCACCGAGGATAAGCTCGTTGCGGTCAGGGATCCTCATGGGTTTCGACCTTTAGTAATGGGGAGGAAGAA TTGCAACGGTGCAATAGTGTTTGCCTCCGAGACTTGTGCTCTCGATTTGATCGATGCCGAGTATGTTAGGGAAGTGAATCCCGGCGAGGTTGTGGTGGTT GACAAGGACGGCATTTCATCGCTGTGTTTACTGACTCATCCTCGCGAGCCGAAGCAGTGCATTTTCGAACATATCTACTTCTCGTTACCGCAGTCTGTGG TCTTCGGGAGGTCAGTGTACGAATCCAGACGCCTCTTCGGGGAGATACTCGCTACCGAGAGTGGAGTCGAATGTGATGTAGTAATTGCTGTTCCGGATTC GGGAGTTGTGGCTGCTCTCGGCTATGCTGCAAAAGCTGGAGTGCCGTTCCAACAAGGGTTGATCCGTTCTCATTACGTGGGGAGGACGTTTATCGAGCCG TCTCAGAAGATTCGCGACTTTGGGGTGAAGCTTAAGCTATCTCCCGTGAGGCAGATCCTGGAAGGGAAGAGGGTTGTGGTGGTGGATGATTCGATCGTGA GGGGGACGACTTCGTCCAAGATTGTTAGGATGATTAAAGAAGCCGGCGCTAAAGAGGTTCACATGAGGGTTGCAAGTCCCCCGATGGTTGCTTCTTGTTA CTATGGAGTCGATACGCCTAGCTCTGGGGAGCTGATATCGAACAGGATGAGTGTGGACGAGATTAGGGATTTCATTGGGTGCGATTCGCTGGCGTTCTTG AACATTGACAGCTTGAACAGGCTGCTTGGGGATGAGTCTCGTAGCTTCTGTTATGCTTGCTTCACTGGGGACTACCCTGTGCTGCCTAAGGAAGTTAAGG TGAAGCGAGTTGGGGATTTTGTGGACGATGGCCTTAGTGGTAGTCTTGATTCCATTGATGGCGGGTGGGTTCAAGGACCGCCGGTTGTTACTACGAAAGC AGCTTGA
AA sequence Show only first row Show all	>Lus10035459 pacid=23170658 polypeptide=Lus10035459 locus=Lus10035459.g ID=Lus10035459.BGIv1.0 annot-version=v1.0 MSTAAAAAANISSISKPSFPQSSKSLFFHKPNHLLPATSKPSSAAASFNLSFSQSHPSHIPLAFRSQTSNPDELDDDKPREECGVIGVYGDPEASRLCYL GLHALQHRGQEGAGIVAVKDQVFQSITGVGLVTDVFNESKINQLPGDLAIGHVRYSTAGASMLKNVQPFVAGYRFGFVGVAHNGNLVNYRKLRAELEETG SIFNTSSDTEAVLHLIAISKARPFLSRIVDACEKLEGAYSMVFVTEDKLVAVRDPHGFRPLVMGRKNCNGAIVFASETCALDLIDAEYVREVNPGEVVVV DKDGISSLCLLTHPREPKQCIFEHIYFSLPQSVVFGRSVYESRRLFGEILATESGVECDVVIAVPDSGVVAALGYAAKAGVPFQQGLIRSHYVGRTFIEP SQKIRDFGVKLKLSPVRQILEGKRVVVVDDSIVRGTTSSKIVRMIKEAGAKEVHMRVASPPMVASCYYGVDTPSSGELISNRMSVDEIRDFIGCDSLAFL NIDSLNRLLGDESRSFCYACFTGDYPVLPKEVKVKRVGDFVDDGLSGSLDSIDGGWVQGPPVVTTKAA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34740		CIA1, ATASE2, A...	CHLOROPLAST IMPORT APPARATUS 1...		Lus10035459 [exp]	0	1
AT3G53630			unknown protein		Lus10003983 [exp]	4.0	0.9283
AT3G09630			Ribosomal protein L4/L1 family...		Lus10014431 [exp]	4.2	0.9423
AT4G10790			UBX domain-containing protein ...		Lus10003214 [exp]	5.7	0.9152
AT5G64670			Ribosomal protein L18e/L15 sup...		Lus10023078 [exp]	10.2	0.9270
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Lus10030482 [exp]	10.8	0.9211
AT5G04520			Protein of unknown function DU...		Lus10028831 [exp]	13.8	0.9137
AT3G57610		ADSS, ATPURA	adenylosuccinate synthase (.1)		Lus10011317 [exp]	17.9	0.9154
AT3G26780		MEF14	mitochondrial editing factor 1...		Lus10031987 [exp]	18.0	0.8603
AT2G04390			Ribosomal S17 family protein (...		Lus10004208 [exp]	20.2	0.9197
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031186 [exp]	20.8	0.9142

Compare expression of checked genes

Lus10035459 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.