Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38890 870 / 0 FMN-linked oxidoreductases superfamily protein (.1) AT3G49640 105 / 2e-24 Aldolase-type TIM barrel family protein (.1.2) AT5G67220 80 / 1e-15 FMN-linked oxidoreductases superfamily protein (.1) AT3G12680 46 / 8e-05 C3HZnF HUA1 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003486 [exp] 95 / 1e-20 AT3G49640 498 / 2e-178 Aldolase-type TIM barrel family protein (.1.2) Lus10041598 [exp] 65 / 7e-11 AT5G67220 593 / 0.0 FMN-linked oxidoreductases superfamily protein (.1) Lus10006260 [exp] 65 / 7e-11 AT5G67220 592 / 0.0 FMN-linked oxidoreductases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G125500 [exp] 928 / 0 AT4G38890 886 / 0.0 FMN-linked oxidoreductases superfamily protein (.1) Potri.007G047300 [exp] 82 / 4e-16 AT5G67220 605 / 0.0 FMN-linked oxidoreductases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF01207 [flax] [poplar] Dus Dihydrouridine synthase (Dus)
Representative CDS sequence Show only first row Show all	>Lus10035460 pacid=23170597 polypeptide=Lus10035460 locus=Lus10035460.g ID=Lus10035460.BGIv1.0 annot-version=v1.0 ATGGCCGAGTCATCGGTTGAACACGCTACAGTCGTCCACGATGCACCGCTACCGCCAGCGTCAAACGGCGGCGGAGCTCCCAAACCTGCTACGCCGGAAG AGTTAGCAGCCAAAGGAATCGCTCCGATTAAGGCGGAGTTCCTCCGGCCTCCTCCTCCTGCCAGAACCACCCAATCCGAAGACGCCGCTCCTGCTGCTAC TTCCGAGTCATCCAATGGTGCTACTGCGTCGGCTTCTCAGTCAGGATTCGTCACAAAGGATAAGAAGTCGAAGCGTCAACTCAAGCGCGAACGGCTTCAG GAGCAAAAATCAGCGTTGCATCTTTGTCCAGTGATTGCGAAGAGTGGTGATGCTAGTTCATGCAAGTACGGTGACAAGTGCCGGTTCAGCCATGATTTGG AAGGCTTCAAAACTCAGAAACCGGACGATCTGGATGGAGTGTGTCCTTTCTTAGATGAGAAAGCGCGGTGCCCTTATGGATTAGCATGTAGGTTTTACAG TACGCACAAGCATGATGTTGGTGTTGTTGGTGATGGATTGAGCGTGACCAACAAAAATGACTCCGAGACTAATGGATTGAGCAAGGACATTCAAAGGCTT TTGTGGAAAAACAAAATGAAGTTTCCGAAAGCAGACGCCGTGCTGAAAGCTCTTGGCCTCTTGGGACCTGCTGTGAAAAAGACAAAGGACGAGCAGGAAG CTAATCATCAAGCGGATAAGAAAGCTGGGGAAGTAGATGGTTTGGGAGAAAAGATTGAACCGAATAATATTGCAGACAATGCAAGGCCATTAAAGAAGGC CAAATCAGATGTCGACGAAACATGTTGCTCTGTTGAACAAGGATCAAGTGTTCCTGAAAAGGAATCTGATGAAACTGTCTTGGATTCACTGCCAGAAGCT GTAAGTGAAGTTCTACATATAGAGACTGATGCAAGTTTGAAAACACATCCACGGGAGAAAAAGCTCGTTGACTTTAGCGGGAAGCTATATCTTGCGCCTT TGACTACCGTTGGAAATCTTCCATTCCGAAGGCTTTGCAAAGTATTGGGAGCTGACATAACTTGTGGCGAAATGGCGATGTGTACAAACTTGTTGCAGGG ACAAGCATCTGAATGGGCGTTGCTGAGACGTCATTCATCTGAAGATTTGTTCGGTGTACAAATTTGTGGGGCATATCCTGATACAGTGGCACGTACTGTT GAACTTATAGAGCAACAGTGTAAAGTTGACTTCATCGATATAAACATGGGTTGCCCCATTGAGGTGGTTGTGAGCAAGGGTGCCGGTTCTTGTCTTCTGT CGAAGCCAATGCGTATGAAAAACGTTATTCAAGCTTCCAGTAGTTCAGTCGAGACGCCCATCACTGTGAAGGTTCGGACAGCTTACTTCGAGGGGAAAAA CCGTATTGATTCTTTGATTGCTGATATGGGAAACTGGGGAGCCAGTGCAGTAACGATTCATGGTCGAACACGACAGCAACGTTATAGCAAACTTGCAGAC TGGGATTACATATCACAGTGTGCTAAGAAGGCCCCAAAGTTGCTGCAAGTGCTTGGGAATGGCGATGTCTTTTCCTCCACAGATTGGAACACCCATAAAT CCAACTGTCCTGAACTCGCTTCCTGTATGATTGGTAGAGGAGCTCTGGTCAAGCCATGGATATTCACTGAAATCAAAGAACAGAGGGACTGGGACATCAG CTCGGGCGAACGACTCGATATCTTGAAGGACTATGTGAAGTTTGGTCTTCAGCATTGGGGATCCGATACAAAAGGCGTGGAAACAACAAGACATTTCCTG CTAGAATGGCTGAGCTACTCTTGCAGGTACATACCACTAGGCCTTCTGGAGATCGTCCCGCAGCATCTCAACTGGCGGCCTCCATCGTACTGTGGACGTG ACGACCTCGAAACGCTCATGGCTTCTGAGTCTGCTGCTGATTGGATTCGAATTTCTGAGATGTTGCTGGGCAAGGTGCCGAATGGGTTCACATTTGCGCC CAAGCACAAGTCCAATGCCTACGATCGAGCTGAAAATGGCTAA
AA sequence Show only first row Show all	>Lus10035460 pacid=23170597 polypeptide=Lus10035460 locus=Lus10035460.g ID=Lus10035460.BGIv1.0 annot-version=v1.0 MAESSVEHATVVHDAPLPPASNGGGAPKPATPEELAAKGIAPIKAEFLRPPPPARTTQSEDAAPAATSESSNGATASASQSGFVTKDKKSKRQLKRERLQ EQKSALHLCPVIAKSGDASSCKYGDKCRFSHDLEGFKTQKPDDLDGVCPFLDEKARCPYGLACRFYSTHKHDVGVVGDGLSVTNKNDSETNGLSKDIQRL LWKNKMKFPKADAVLKALGLLGPAVKKTKDEQEANHQADKKAGEVDGLGEKIEPNNIADNARPLKKAKSDVDETCCSVEQGSSVPEKESDETVLDSLPEA VSEVLHIETDASLKTHPREKKLVDFSGKLYLAPLTTVGNLPFRRLCKVLGADITCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTVARTV ELIEQQCKVDFIDINMGCPIEVVVSKGAGSCLLSKPMRMKNVIQASSSSVETPITVKVRTAYFEGKNRIDSLIADMGNWGASAVTIHGRTRQQRYSKLAD WDYISQCAKKAPKLLQVLGNGDVFSSTDWNTHKSNCPELASCMIGRGALVKPWIFTEIKEQRDWDISSGERLDILKDYVKFGLQHWGSDTKGVETTRHFL LEWLSYSCRYIPLGLLEIVPQHLNWRPPSYCGRDDLETLMASESAADWIRISEMLLGKVPNGFTFAPKHKSNAYDRAENG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38890			FMN-linked oxidoreductases sup...		Lus10035460 [exp]	0	1
AT3G20540		PolIB, POLGAMMA...	polymerase I B, polymerase gam...		Lus10019619 [exp]	1.4	0.9594
AT1G24090			RNase H family protein (.1)		Lus10020869 [exp]	2.0	0.9355
AT3G10690		GYRA	DNA GYRASE A (.1)		Lus10008940 [exp]	3.2	0.9480
AT3G61690			nucleotidyltransferases (.1)		Lus10030265 [exp]	4.9	0.9469
AT3G20540		PolIB, POLGAMMA...	polymerase I B, polymerase gam...		Lus10040048 [exp]	5.5	0.9308
AT1G42440			unknown protein		Lus10030752 [exp]	6.0	0.9222
AT2G28600			P-loop containing nucleoside t...		Lus10034162 [exp]	7.4	0.9190
AT5G04130		GYRB2	DNA GYRASE B2 (.1.2)		Lus10010428 [exp]	8.1	0.9344
AT4G21430		B160	Zinc finger, RING-type;Transcr...		Lus10006741 [exp]	9.5	0.9194
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10025131 [exp]	9.8	0.9104

Compare expression of checked genes

Lus10035460 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.