Plant FIBer expression Database

Lus10035461 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G44150 75 / 6e-16 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038027
[exp]
205 / 4e-67 AT5G44150 123 / 2e-33 unknown protein
Lus10018632
[exp]
184 / 3e-57 AT5G44150 202 / 6e-62 unknown protein
Lus10039868
[exp]
180 / 1e-55 AT5G44150 201 / 2e-61 unknown protein
Lus10005598
[exp]
167 / 9e-53 AT5G44150 124 / 2e-34 unknown protein
Lus10011074
[exp]
0 / 1 AT5G44150 84 / 1e-19 unknown protein
Lus10014193
[exp]
0 / 1 AT5G44150 50 / 2e-08 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G017200
[exp]
59 / 3e-10 AT5G44150 137 / 2e-36 unknown protein
PFAM info
Representative CDS sequence
>Lus10035461 pacid=23170460 polypeptide=Lus10035461 locus=Lus10035461.g ID=Lus10035461.BGIv1.0 annot-version=v1.0
ATGGGTAGCTCGATTAAAAAATGGACGCCAAATCAACAGCGAAGTCCAAGCGAGCTCACTCTCTACACCACAACAAGAAGCCACACCCGTCTCGTATCAA
CTACTGCAAGCGGTGGAGATGGTGGAATCACAAGTAAATCGTCTGGAAAGTCGGTTAAGGAGCGAAAACAAGCTGCCTCGCTCGCTTTGCCGTCGAATTC
CGATCGTTACGAGGAAGAGTTTGATTCAGATTCGGCGAAAATGTCAGTTAAGACCTCCGGTGTAGCGTTGCCGCAGATGTCAATTAAGACCTCCGATGTA
GCGTTACCGAAGAGCAAAGGTGCAAATTACCGCCTTGCTGAGTGTCAATCCCAGCCGATTTCTAGTGGCTTCTTGGACAGCTTGTTTTCTCTGGACGATG
TTATGCCTGATGAATTCAAACACTCGTTAGGTCTGATGCTTTCAGCAAGAGGAGAGGGAATCTTGTCATGGATTTTGAATGATAATTTAATTGTGGAAGA
CGATATTGGAGCGAATGCTATTCAGGAGGTAATCGACTTGCTTCGAATGAATCGAATTGTTGTTCTTCATTGTTAG
AA sequence
>Lus10035461 pacid=23170460 polypeptide=Lus10035461 locus=Lus10035461.g ID=Lus10035461.BGIv1.0 annot-version=v1.0
MGSSIKKWTPNQQRSPSELTLYTTTRSHTRLVSTTASGGDGGITSKSSGKSVKERKQAASLALPSNSDRYEEEFDSDSAKMSVKTSGVALPQMSIKTSDV
ALPKSKGANYRLAECQSQPISSGFLDSLFSLDDVMPDEFKHSLGLMLSARGEGILSWILNDNLIVEDDIGANAIQEVIDLLRMNRIVVLHC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G44150 unknown protein Lus10035461
[exp]
0 1
AT1G72160 Sec14p-like phosphatidylinosit... Lus10016928
[exp]
4.4 0.7764
AT5G15240 Transmembrane amino acid trans... Lus10030469
[exp]
12.1 0.6658
AT5G41040 HXXXD-type acyl-transferase fa... Lus10001065
[exp]
14.8 0.6495
AT2G04865 Aminotransferase-like, plant m... Lus10032799
[exp]
16.7 0.6200
AT3G02360 6-phosphogluconate dehydrogena... Lus10029098
[exp]
16.9 0.6296
AT5G65205 NAD(P)-binding Rossmann-fold s... Lus10011729
[exp]
19.7 0.6198
AT5G58300 Leucine-rich repeat protein ki... Lus10039483
[exp]
28.1 0.5774
AT4G16295 SPH1 S-protein homologue 1 (.1) Lus10029390
[exp]
28.9 0.6131
AT5G33340 CDR1 CONSTITUTIVE DISEASE RESISTANC... Lus10029913
[exp]
30.9 0.6131
Lus10000400
[exp]
32.7 0.6131

Lus10035461 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.