Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21240 325 / 4e-109 BBR_BPC BPC4, BBR/BPC4, ATBPC4 basic pentacysteine 4 (.1.2) AT4G38910 294 / 1e-97 BBR_BPC BPC5, BBR/BPC5, ATBPC5 basic pentacysteine 5 (.1.2) AT5G42520 254 / 4e-81 BBR_BPC BPC6, BBR/BPC6, ATBPC6 ARABIDOPSIS THALIANA BASIC PENTACYSTEINE 6, basic pentacysteine 6 (.1.2.3) AT2G35550 159 / 3e-45 BBR_BPC BPC7, BBR/BPC7, ATBPC7 basic pentacysteine 7 (.1.2.3.4) AT1G14685 149 / 2e-41 BBR_BPC BBR/BPC2, ATBPC2, BPC2 basic pentacysteine 2 (.1.2.3) AT2G01930 146 / 3e-40 BBR_BPC BPC1, BBR/BPC1, ATBPC1 basic pentacysteine1 (.1.2) AT1G68120 145 / 5e-40 BBR_BPC BPC3, BBR/BPC3, ATBPC3 basic pentacysteine 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031078 [exp] 562 / 0 AT2G21240 323 / 5e-111 basic pentacysteine 4 (.1.2) Lus10018060 [exp] 372 / 8e-128 AT2G21240 355 / 1e-123 basic pentacysteine 4 (.1.2) Lus10042056 [exp] 365 / 6e-125 AT2G21240 350 / 1e-121 basic pentacysteine 4 (.1.2) Lus10012389 [exp] 261 / 9e-84 AT5G42520 432 / 1e-152 ARABIDOPSIS THALIANA BASIC PENTACYSTEINE 6, basic pentacysteine 6 (.1.2.3) Lus10024313 [exp] 261 / 2e-83 AT5G42520 436 / 5e-154 ARABIDOPSIS THALIANA BASIC PENTACYSTEINE 6, basic pentacysteine 6 (.1.2.3) Lus10023543 [exp] 149 / 3e-41 AT2G01930 292 / 5e-99 basic pentacysteine1 (.1.2) Lus10040427 [exp] 149 / 4e-41 AT2G01930 295 / 4e-100 basic pentacysteine1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G125300 [exp] 382 / 4e-131 AT2G21240 377 / 5e-132 basic pentacysteine 4 (.1.2) Potri.004G163700 [exp] 367 / 3e-125 AT2G21240 378 / 3e-132 basic pentacysteine 4 (.1.2) Potri.002G026700 [exp] 245 / 1e-77 AT5G42520 439 / 2e-155 ARABIDOPSIS THALIANA BASIC PENTACYSTEINE 6, basic pentacysteine 6 (.1.2.3) Potri.005G235900 [exp] 228 / 6e-71 AT5G42520 428 / 6e-151 ARABIDOPSIS THALIANA BASIC PENTACYSTEINE 6, basic pentacysteine 6 (.1.2.3) Potri.015G032900 [exp] 154 / 3e-43 AT1G14685 259 / 3e-86 basic pentacysteine 2 (.1.2.3) Potri.012G040700 [exp] 150 / 5e-42 AT1G14685 247 / 1e-81 basic pentacysteine 2 (.1.2.3) Potri.015G032800 [exp] 148 / 5e-41 AT1G14685 268 / 9e-90 basic pentacysteine 2 (.1.2.3) Potri.010G101400 [exp] 147 / 5e-41 AT1G14685 300 / 1e-102 basic pentacysteine 2 (.1.2.3) Potri.008G140200 [exp] 147 / 7e-41 AT2G01930 296 / 1e-100 basic pentacysteine1 (.1.2) Potri.012G040600 [exp] 147 / 7e-41 AT2G01930 259 / 3e-86 basic pentacysteine1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06217 [flax] [poplar] GAGA_bind GAGA binding protein-like family
Representative CDS sequence Show only first row Show all	>Lus10035462 pacid=23170571 polypeptide=Lus10035462 locus=Lus10035462.g ID=Lus10035462.BGIv1.0 annot-version=v1.0 ATGGTCCCACAGCATCAGGGGAAGGAACAAGCAAATGCCTTAATGAAGAACAAGAAGATCATGGGCATCGTTGCCGAGAGAGATGCAGCCATTCAAGAAC GTAATCTTGCTCTTTCCGAGAAAAGGGAAGCCCTGGCTGCCCGAGACGAAGCAATCCAGCAGCGACAGAAAGCCCTCATCGAGAGAGATAAAGCCTTGAT GGAGCGGGACAATGCCTACGCAGCAATTCGATACCGTGAAAACGAAATGAGCTTCTCCTCAAGCCAGCGTGGTGGATCTAAGTGTATCCCACATCCTGTT TACCTTCGTAACGACTTGGAACATGACGAAGAAGTAGCAGCTAACAAGCAGCCCAAGCGATCGAAAGAGAACAATGCAGCATCTCTGAAGGCAACCAAAC CGCGGAAGAAGGGGAGCAAAACTGGAGAAGACAGTCCTCCGAACAGACAAGCCATCGTGGCTGTTGTATCTGAAGGAACAAAGTTCAGGTCCGAATGGGA CGCACTGGACATGGAGCTCAACCTAATCAGCTACGATGAATCGATGATGCCACCGCCAGTCTGCTCATGCACAGGAACTCCACATCAGTGCTACAAATGG GGGAGCGGTGGGTGGCAATCTTCGTGCTGCACGACCACCATTTCGTGCCATCCGCTCCCACAGCTTCCCAACAAACGCCACTCTCGAGTGGGTGGTAGGA AGATGAGCAGCGGCGTGTTCACGAAGCTGCTGAGCCGGCTTGCAGCTGCGGGACATGATCTGTCGGTTCCTCTCGATCTCAAGGACTACTGGGCTAGACA CGGCACCAACCGCTACATCACCATAAAACTAGTTGCAGCTGATGATGATGATCAATTGAGAGGGAAACTGAAAGTTGCTGTTGGAAGCATTGAAAAGGGG AAAGAGAAATTCGCCATGGATGACGACGGTAAATTGAGGACAATTAACGAGTTTTTTTCCTTTTCTTCTCCGATTGAAGTAAAGGAAACTGAGGAGGAGC AAGCTCGTAATGAGGAAGAAGAATTCACCATTTCTTCTCTATTCGAAGTGGCCGAAACGAGAAACATTGCAACAGGGGAAGGGAAATCCGTCATGGATGA CCACTGTAAATTGAGGACAGTTAACGACTATTTCATTTCTTCTCCTATTGAAGTAACAGAAACAGAGGAGGAGCAAGCTAGTATTAAGGAAGAAGAATTC ACCTTTACTTCTCTATTTCAAGTGGCTAAAACAAGAATGTTTGATTTGAGCCAGGAGGAGGAGATCAATATATATCTGAAAGATTTGAGTAAAAGATGTG ATAGCGTGGGATGCCGTCATCATTATGGATACAACATCAGCCGTAAGGAAGAGATTCCTGAAACGAGCTCAGTTGTTCGTTCTGATTGA
AA sequence Show only first row Show all	>Lus10035462 pacid=23170571 polypeptide=Lus10035462 locus=Lus10035462.g ID=Lus10035462.BGIv1.0 annot-version=v1.0 MVPQHQGKEQANALMKNKKIMGIVAERDAAIQERNLALSEKREALAARDEAIQQRQKALIERDKALMERDNAYAAIRYRENEMSFSSSQRGGSKCIPHPV YLRNDLEHDEEVAANKQPKRSKENNAASLKATKPRKKGSKTGEDSPPNRQAIVAVVSEGTKFRSEWDALDMELNLISYDESMMPPPVCSCTGTPHQCYKW GSGGWQSSCCTTTISCHPLPQLPNKRHSRVGGRKMSSGVFTKLLSRLAAAGHDLSVPLDLKDYWARHGTNRYITIKLVAADDDDQLRGKLKVAVGSIEKG KEKFAMDDDGKLRTINEFFSFSSPIEVKETEEEQARNEEEEFTISSLFEVAETRNIATGEGKSVMDDHCKLRTVNDYFISSPIEVTETEEEQASIKEEEF TFTSLFQVAKTRMFDLSQEEEINIYLKDLSKRCDSVGCRHHYGYNISRKEEIPETSSVVRSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21240	BBR_BPC	BPC4, BBR/BPC4,...	basic pentacysteine 4 (.1.2)		Lus10035462 [exp]	0	1
					Lus10042733 [exp]	4.9	0.6816
AT5G19580			glyoxal oxidase-related protei...		Lus10043231 [exp]	7.9	0.7229
AT1G76140			Prolyl oligopeptidase family p...		Lus10021835 [exp]	11.2	0.6988
AT1G23000			Heavy metal transport/detoxifi...		Lus10028529 [exp]	13.9	0.7337
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10010802 [exp]	14.2	0.7621
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10035637 [exp]	15.5	0.7147
AT5G20990		B73, CNX1, SIR4...	SIRTINOL 4, CO-FACTOR FOR NITR...		Lus10000717 [exp]	28.6	0.6809
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10019725 [exp]	30.0	0.6269
AT5G27260			unknown protein		Lus10035759 [exp]	31.5	0.6600
AT4G01310			Ribosomal L5P family protein (...		Lus10036391 [exp]	37.5	0.6660

Compare expression of checked genes

Lus10035462 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.