Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16500 141 / 2e-38 SPE1, ARGDC1, ADC1 arginine decarboxylase 1 (.1) AT4G34710 0 / 1 SPE2, ADC2, ATADC2 arginine decarboxylase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031079 [exp] 0 / 1 AT4G34710 1040 / 0.0 arginine decarboxylase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G163300 [exp] 0 / 1 AT4G34710 988 / 0.0 arginine decarboxylase 2 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035463 pacid=23170574 polypeptide=Lus10035463 locus=Lus10035463.g ID=Lus10035463.BGIv1.0 annot-version=v1.0 ATGCCTGCCTTAGCGTGTTGCGTAGACTCTGCTGTTATGCCGCCTCCTGGCTACGGTTTCTCCGCTGGGGAGAACAACATCGCCCTTCCATCGCAGGTCC CCTTTTCAGGCCTCCCTCACTCTCCAACCTCCGCCGAAGCCACCAATTGGTCACCGTCCCTCTCCTCTTCTCTCTACCACGTCGATGGCTGGGGCGCTCC GTACTTCGCCGTGAACACCTCCGGCAACATCGCTGTCCGTCCTCACGGCGGTGACACTCTGCCCCATCAGGAAATCGATCTGGTGAAGATAATAAAGAAG GTTTCCGATCCGAAATCAAACGGAGGGCTGGGGCTGCAGCTGCCTCTAATCATCCGCTTCCCTGACGTGCTTAAGAACCGCCTCGAGTCTCCTCTGGCAG CTTTTTGGCTAAAAAAAAAAAAACGAGCTCGCCGTCCAATCCCAGGGCTACGATTCTCATTACCAGGGTGTCTACCCGGTGAAATGCAACCAAGACCGGT TCGTCGTGGAGGACATTGTGAAATTCGGTTCATCTTTCCGGTTCGGGTTGGAAGCTGGGTCGAAACCAGAGCTCCTCCTCGCCATGAGCTGTCTCTGCAG AGGAAGCCAAGATGCTTTCCTGGTTTGCAACGGGTTCAAAGATGCAGAGTACATTTCCCTAGCTTTGCTAGCTAG
AA sequence Show only first row Show all	>Lus10035463 pacid=23170574 polypeptide=Lus10035463 locus=Lus10035463.g ID=Lus10035463.BGIv1.0 annot-version=v1.0 MPALACCVDSAVMPPPGYGFSAGENNIALPSQVPFSGLPHSPTSAEATNWSPSLSSSLYHVDGWGAPYFAVNTSGNIAVRPHGGDTLPHQEIDLVKIIKK VSDPKSNGGLGLQLPLIIRFPDVLKNRLESPLAAFWLKKKKRARRPIPGLRFSLPGCLPGEMQPRPVRRGGHCEIRFIFPVRVGSWVETRAPPRHELSLQ RKPRCFPGLQRVQRCRVHFPSFAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34710		SPE2, ADC2, ATA...	arginine decarboxylase 2 (.1.2...		Lus10035463 [exp]	0	1
AT4G34710		SPE2, ADC2, ATA...	arginine decarboxylase 2 (.1.2...		Lus10035464 [exp]	1.0	0.9704
AT5G67150			HXXXD-type acyl-transferase fa...		Lus10031148 [exp]	4.0	0.9217
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10042611 [exp]	8.8	0.9058
AT3G47000			Glycosyl hydrolase family prot...		Lus10005871 [exp]	9.2	0.9178
AT5G61510			GroES-like zinc-binding alcoho...		Lus10009657 [exp]	12.0	0.9174
AT5G61510			GroES-like zinc-binding alcoho...		Lus10009658 [exp]	15.8	0.9075
AT3G27890		NQR	NADPH:quinone oxidoreductase (...		Lus10039505 [exp]	16.9	0.9039
AT2G24260	bHLH	LRL1, bHLH066	LJRHL1-like 1 (.1)		Lus10021846 [exp]	21.0	0.9013
AT1G73880		UGT89B1	UDP-glucosyl transferase 89B1 ...		Lus10013500 [exp]	23.0	0.8824
AT2G46370		FIN219, JAR1	JASMONATE RESISTANT 1, FAR-RED...		Lus10005151 [exp]	25.5	0.8758

Compare expression of checked genes

Lus10035463 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.