Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34710 526 / 0 SPE2, ADC2, ATADC2 arginine decarboxylase 2 (.1.2) AT2G16500 524 / 0 SPE1, ARGDC1, ADC1 arginine decarboxylase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031079 [exp] 731 / 0 AT4G34710 1040 / 0.0 arginine decarboxylase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G163300 [exp] 559 / 0 AT4G34710 988 / 0.0 arginine decarboxylase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF02784 [flax] [poplar] Orn_Arg_deC_N Pyridoxal-dependent decarboxylase, pyridoxal binding domain CL0036 [flax] [poplar] PF00278 [flax] [poplar] Orn_DAP_Arg_deC Pyridoxal-dependent decarboxylase, C-terminal sheet domain
Representative CDS sequence Show only first row Show all	>Lus10035464 pacid=23170676 polypeptide=Lus10035464 locus=Lus10035464.g ID=Lus10035464.BGIv1.0 annot-version=v1.0 ATGCTTGATTGCTTCCAGCTTCTGCATTTCCACATCGGATCGCAGATCCCTTCCACCGAGCTCCTCGCTAATGGCGTCGGTGAAGCTGCGCAGATCTACT GCGAATTGGTCCGTCTAGGTGCCAACATGCAGGTCCTCGACATTGGAGGTGGATTAGGGATCGACTATGACGGTTCGAAATCGGGAGACTCTGATCTTTC AGTAGCTTACGGACTTCGAGAGTATGCTCTAGCTGTCGTCCAGGCAGTGAAGTTTGTCTGTGATCGGGAAAGGGTCAAGCATCCAATTCTCTGCAGCGAG AGCGGCAGGGCAATTGTATCTCACCATTCGGTGCTGATATTTGAAGCTGTTTCGTCATCTGTGTCCAAGGCTGCTACAATGACTCCATTAGCGCTGCAGT ACTTTGTGGACGGCCTCACTGATGAAGGTCGCTCCGATTACCGGAACTTGACTGGTGCTGCCATGAGAGGTGAGTATGATACCTGCTTGGTCTATGCTGA ACAAATGAAACAGAGGTGTGTTGATCTGTTTAGAGATGGTACTATCGGTATGGAACATTTGGCTGCTGTGGATGCTCTGTGTGAATTCGTTGGGAAAGCC ATTGGCGTTGCTGAGCCAGTCAGTACTTATTATGTCAACCTCTCGGTTTTCACATCTATCCCCGATTTCTGGGGGATTCAGCAGCTATTCCCGATAATGC CGATCCATAGGCTGGATGAACGGCCCGGAGTGAGAGGGATACTCTCTGACTTGACCTGCGATAGCGATGGCAAGATTGATAAGTTCATCGGTGGTGAATC GAGCTTGCCCCTTCACGAGATTGGCGGTGGCGGAGGAAGTGGACCGTACTACTTGGGGATGTTCTTGGGTGGGGCGTATGAGGAGGCACTCGGAGGAGTG CACAACCTGTTCGGTGGTCCTAGCGTTGTGAGGGTGTCGCAGAGTGATGGCCCTCATAGCTTTGCTGTGACTAGAGCTGTTCCTGGGCCATCGTGCAGTG ATGTCCTCCGGGTAATGCAGCATGAGCCCGAACTTATGTTCGAGACCCTCAAGCACCGTGCCGAAGAGACGATTTACGACGAGGAAGAGAGCGAGATTGG TAGCACGCTTGCTAGGTCGTTCAGCAACATGCCTTACCTGGATGCTGGTATGGGTGCGACGTCTTGCTCTTTGACTGCTGCTATGGTTGAGAATGGCGGA GGGTTTTTACTACTGCAGCGTGGATGA
AA sequence Show only first row Show all	>Lus10035464 pacid=23170676 polypeptide=Lus10035464 locus=Lus10035464.g ID=Lus10035464.BGIv1.0 annot-version=v1.0 MLDCFQLLHFHIGSQIPSTELLANGVGEAAQIYCELVRLGANMQVLDIGGGLGIDYDGSKSGDSDLSVAYGLREYALAVVQAVKFVCDRERVKHPILCSE SGRAIVSHHSVLIFEAVSSSVSKAATMTPLALQYFVDGLTDEGRSDYRNLTGAAMRGEYDTCLVYAEQMKQRCVDLFRDGTIGMEHLAAVDALCEFVGKA IGVAEPVSTYYVNLSVFTSIPDFWGIQQLFPIMPIHRLDERPGVRGILSDLTCDSDGKIDKFIGGESSLPLHEIGGGGGSGPYYLGMFLGGAYEEALGGV HNLFGGPSVVRVSQSDGPHSFAVTRAVPGPSCSDVLRVMQHEPELMFETLKHRAEETIYDEEESEIGSTLARSFSNMPYLDAGMGATSCSLTAAMVENGG GFLLLQRG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34710		SPE2, ADC2, ATA...	arginine decarboxylase 2 (.1.2...		Lus10035464 [exp]	0	1
AT4G34710		SPE2, ADC2, ATA...	arginine decarboxylase 2 (.1.2...		Lus10035463 [exp]	1.0	0.9704
AT5G61510			GroES-like zinc-binding alcoho...		Lus10009658 [exp]	3.5	0.9447
AT5G67150			HXXXD-type acyl-transferase fa...		Lus10031148 [exp]	4.9	0.9275
AT1G73880		UGT89B1	UDP-glucosyl transferase 89B1 ...		Lus10013500 [exp]	5.2	0.9255
AT5G61510			GroES-like zinc-binding alcoho...		Lus10009657 [exp]	5.2	0.9394
AT3G47000			Glycosyl hydrolase family prot...		Lus10005871 [exp]	9.4	0.9258
AT2G30140			UDP-Glycosyltransferase superf...		Lus10042261 [exp]	13.1	0.9349
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Lus10021321 [exp]	13.5	0.9265
AT5G17000			Zinc-binding dehydrogenase fam...		Lus10004379 [exp]	13.6	0.9280
AT4G22750			DHHC-type zinc finger family p...		Lus10015872 [exp]	17.7	0.8796

Compare expression of checked genes

Lus10035464 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.