Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30700 550 / 0 FAD-binding Berberine family protein (.1) AT1G34575 468 / 6e-161 FAD-binding Berberine family protein (.1) AT1G30710 466 / 4e-160 FAD-binding Berberine family protein (.1) AT1G11770 464 / 2e-159 FAD-binding Berberine family protein (.1) AT4G20840 461 / 5e-158 FAD-binding Berberine family protein (.1) AT1G30720 459 / 2e-157 FAD-binding Berberine family protein (.1) AT1G30730 447 / 5e-153 FAD-binding Berberine family protein (.1) AT1G01980 444 / 1e-151 ATSEC1A FAD-binding Berberine family protein (.1) AT1G30760 441 / 1e-150 FAD-binding Berberine family protein (.1) AT4G20800 440 / 4e-150 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009009 [exp] 669 / 0 AT1G30700 534 / 0.0 FAD-binding Berberine family protein (.1) Lus10023375 [exp] 569 / 0 AT1G30700 606 / 0.0 FAD-binding Berberine family protein (.1) Lus10038439 [exp] 499 / 3e-173 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10023365 [exp] 446 / 4e-152 AT1G11770 520 / 0.0 FAD-binding Berberine family protein (.1) Lus10032943 [exp] 439 / 1e-149 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10038437 [exp] 435 / 4e-148 AT1G26380 484 / 2e-167 FAD-binding Berberine family protein (.1) Lus10023361 [exp] 435 / 1e-147 AT2G34790 674 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10031080 [exp] 423 / 2e-146 AT1G30700 258 / 2e-82 FAD-binding Berberine family protein (.1) Lus10023374 [exp] 429 / 5e-146 AT1G26380 500 / 5e-174 FAD-binding Berberine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G158300 [exp] 656 / 0 AT1G30700 616 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462200 [exp] 566 / 0 AT1G30700 647 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G470100 [exp] 559 / 0 AT1G30700 543 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158400 [exp] 545 / 0 AT1G34575 649 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G155900 [exp] 535 / 0 AT4G20800 617 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459500 [exp] 534 / 0 AT4G20800 559 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459100 [exp] 534 / 0 AT4G20800 623 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462400 [exp] 533 / 0 AT1G30700 647 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158500 [exp] 516 / 5e-180 AT1G01980 671 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462600 [exp] 511 / 8e-178 AT1G01980 658 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF08031 [flax] [poplar] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Lus10035466 pacid=23170477 polypeptide=Lus10035466 locus=Lus10035466.g ID=Lus10035466.BGIv1.0 annot-version=v1.0 ATGGAGCAAACATGCAGCAGCTTCCTCACTTCCCTCTCAAACAACTCCGACCCGGCCCACCCAATCGCCCCCGCCGTCTACACCCCTCACCACCCTTCCT ACTCCTCCGTCCTCAATGCCTACATCCACAACCTCCGCTTCACCACCCCATCAACCCCCAAGCCCTTCCTCATCCTCACCGCATCCCACTATTCCCACGT CCGTGCAGCCGTCCTCGCCGCCACCGCCCACACCGGCGTCCACATGAAGATCCGCAGCGGCGGCCACGACTACGAAGGCAGATCCTACACCTCCGATCAC TCTCCTTTCTTCATCCTCGACATGTGCAACCTCCGCGCTATCCACGTCGACATCCAATCCCAGACTGCATGGGTCGAATGCGGAGCCACACTCGGAGAGT TCTACCACGCCATTGCCGATAAGAGCCCCACCCACGCCTTCCCTGCAGGTGTGTGCCCCACCGTCGGCGTTGGCGGACACTTACTCGGCGGCGGGTACGG TAACCTCATGCGGAAGTACGGGCTGTCTATCGACAACATTGTCGACGCTCGAATCGTCGACGCCAACGGTAACGTTCTCGACAGAGAATCCATGGGAGAG GATCTATTCTGGGCCATACGTGGCGGCGGCGCAAGCTTCGGAGTTGTCCTGTCGTACAAGGTCAACTTGGTCAAAGTCCCGGAGGTGGTCACCGTTTTCC GAGTCTGGAGAACGTTGGAGGAGAACGCTAGTGAGATGGTTTACACGTGGCAGAAGGTGGCCCCAACTGCTGACGTGGATCTCTTCATCAGGCTGGTGTT GGACGTTGTAACTACTAGTGTAAAAAAACACAAGACGGTTCGCGCGACATTCATCGGGATGTTCCTGGGGAGATCGGAGAGGCTAAGTTCGATAATGAGG GAAACATTTCCGGAGCTCGGATTAACAGCGTCGGATTGCGTGGAGACGAGCTGGATCAATACGGTGGCGTTTTGGGCGGACAAGTCTGAAGTGACCAAGA CACGTACGGAGATGGAGGAAGTGATGTTGTCGGGTCGTCGACGACCCGACAACCTGATCCATTTGAAGAGGAAGTCGGACTACGTGCAAAGTCCGATTTC GAAGGAGGGGCTGGAGAAGATATGGGAGAAGATGATGGAAGTGGAAGTGGTGAAGATGGGGTTCAATCCGTACGGAGGGAGGATGAGCGAGATATCGGCT GAAGCGACGCCTTTTCCTCACAGGGCGGGGAATCTGTGGAAGATTCAGTACCAGGCGAATTGGACGGAGGAAGGGAAAGAAGCTGAGAGGCGGCATTTGG AGCTGTGTAGGGAGATGTACGATTATATGACTCCGTACGTGTCGAGTTGTCCAAGGGGAGCGTTTTTGAACTATAAGGATTTGGATTTGGGGATCATCGA TGGTAACGGCCGCGGCGGGTACGAGGAAGGTAGACGTTACGGATTGAGTTACTTCAGGGGGAATTTTGACAAGTTGGTGAGGATTAAGAGCGAGGTGGAT CCTGGGAATTTGTTTAGGCATGAACAGAGTGTGCCGAAGACGACGCTTCCTTCCTGCCGTCCGAGATTGTGA
AA sequence Show only first row Show all	>Lus10035466 pacid=23170477 polypeptide=Lus10035466 locus=Lus10035466.g ID=Lus10035466.BGIv1.0 annot-version=v1.0 MEQTCSSFLTSLSNNSDPAHPIAPAVYTPHHPSYSSVLNAYIHNLRFTTPSTPKPFLILTASHYSHVRAAVLAATAHTGVHMKIRSGGHDYEGRSYTSDH SPFFILDMCNLRAIHVDIQSQTAWVECGATLGEFYHAIADKSPTHAFPAGVCPTVGVGGHLLGGGYGNLMRKYGLSIDNIVDARIVDANGNVLDRESMGE DLFWAIRGGGASFGVVLSYKVNLVKVPEVVTVFRVWRTLEENASEMVYTWQKVAPTADVDLFIRLVLDVVTTSVKKHKTVRATFIGMFLGRSERLSSIMR ETFPELGLTASDCVETSWINTVAFWADKSEVTKTRTEMEEVMLSGRRRPDNLIHLKRKSDYVQSPISKEGLEKIWEKMMEVEVVKMGFNPYGGRMSEISA EATPFPHRAGNLWKIQYQANWTEEGKEAERRHLELCREMYDYMTPYVSSCPRGAFLNYKDLDLGIIDGNGRGGYEEGRRYGLSYFRGNFDKLVRIKSEVD PGNLFRHEQSVPKTTLPSCRPRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30700			FAD-binding Berberine family p...		Lus10035466 [exp]	0	1
AT3G19020			Leucine-rich repeat (LRR) fami...		Lus10023853 [exp]	3.2	0.8335
AT1G26945	bHLH	KDR, PRE6	KIDARI, basic helix-loop-helix...		Lus10037198 [exp]	5.7	0.8869
AT1G67750			Pectate lyase family protein (...		Lus10006456 [exp]	6.0	0.8296
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Lus10003888 [exp]	9.9	0.8560
AT1G53470		MSL4	mechanosensitive channel of sm...		Lus10042499 [exp]	15.3	0.8252
AT5G07030			Eukaryotic aspartyl protease f...		Lus10026171 [exp]	15.3	0.7837
AT5G47900			Protein of unknown function (D...		Lus10039223 [exp]	19.4	0.8285
AT4G10960		UGE5	UDP-D-glucose/UDP-D-galactose ...		Lus10032394 [exp]	20.8	0.8021
AT5G02190		EMB24, ATASP38,...	PROMOTION OF CELL SURVIVAL 1, ...		Lus10024375 [exp]	21.5	0.7929
AT1G29430			SAUR-like auxin-responsive pro...		Lus10025115 [exp]	23.4	0.8588

Compare expression of checked genes

Lus10035466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.