Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031082 [exp] 234 / 7e-76 ND / Lus10020249 [exp] 73 / 1e-15 ND / Lus10024934 [exp] 66 / 4e-13 ND / Lus10025503 [exp] 64 / 3e-12 ND / Lus10002735 [exp] 44 / 1e-05 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035468 pacid=23170541 polypeptide=Lus10035468 locus=Lus10035468.g ID=Lus10035468.BGIv1.0 annot-version=v1.0 ATGGCCACTACCGTGGTCATTAACAATACCACAAAACCTAAGACGAAAGTGTTGAAGTTAACATTCGATGATACGAGGAATAGCACTTGGAAGAACTGCT CTTCGTTGAAACTAGCGGGCAGCCCCAAGTTGAGGATTGAGTCGGACGTTGTCCACATCGGGGACTCAGAGATCAAGGTGTCAGCTAGCGAGTATGGGAC TTCATATGTGTGGGATGAAACAACAATGAGGACATTGAGCGTGACAAGAGTACATAAGGTTGTGGTGTCACCAATGATGAAGATTACAGTAAGACTTGTT GTGATGATCGGTATGTGTGAAGTTCCATTCTCATACGTTCAACACGACATTCTTTACAACAGAGAAGATGAAACTTATGTTCAAGATGATGGGTTGTATG TAGGAACCAACGCTTATAACTTTGTCTATGAGACATCGGAAGATCCACTAGAGGCTAGACTCTAG
AA sequence Show only first row Show all	>Lus10035468 pacid=23170541 polypeptide=Lus10035468 locus=Lus10035468.g ID=Lus10035468.BGIv1.0 annot-version=v1.0 MATTVVINNTTKPKTKVLKLTFDDTRNSTWKNCSSLKLAGSPKLRIESDVVHIGDSEIKVSASEYGTSYVWDETTMRTLSVTRVHKVVVSPMMKITVRLV VMIGMCEVPFSYVQHDILYNREDETYVQDDGLYVGTNAYNFVYETSEDPLEARL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10035468 [exp]	0	1
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Lus10001292 [exp]	1.0	0.7949
AT1G80245			Spc97 / Spc98 family of spindl...		Lus10018344 [exp]	3.6	0.6924
AT2G26975			Ctr copper transporter family ...		Lus10023045 [exp]	4.2	0.7660
AT1G24590	AP2_ERF	ESR2, DRNL, SOB...	FOR SUPPRESSOR OF PHYTOCHROMEB...		Lus10017907 [exp]	6.0	0.7592
AT1G13290	C2H2ZnF	WIP6, DOT5	WIP domain protein 6, DEFECTIV...		Lus10035044 [exp]	6.5	0.7170
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10002511 [exp]	11.8	0.7526
AT1G52190			Major facilitator superfamily ...		Lus10008539 [exp]	17.1	0.7251
AT1G65450			HXXXD-type acyl-transferase fa...		Lus10029920 [exp]	22.1	0.7079
AT5G43190			Galactose oxidase/kelch repeat...		Lus10007740 [exp]	22.5	0.7383
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10034348 [exp]	23.4	0.7079

Compare expression of checked genes

Lus10035468 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.