Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34700 148 / 3e-46 CIB22, AtCIB22 B22 subunit of eukaryotic mitochondrial Complex I, LYR family of Fe/S cluster biogenesis protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031084 [exp] 184 / 2e-60 AT4G34700 176 / 1e-58 B22 subunit of eukaryotic mitochondrial Complex I, LYR family of Fe/S cluster biogenesis protein (.1) Lus10018052 [exp] 173 / 8e-55 AT4G34700 179 / 5e-58 B22 subunit of eukaryotic mitochondrial Complex I, LYR family of Fe/S cluster biogenesis protein (.1) Lus10042049 [exp] 167 / 1e-53 AT4G34700 195 / 4e-66 B22 subunit of eukaryotic mitochondrial Complex I, LYR family of Fe/S cluster biogenesis protein (.1) Lus10031082 [exp] 146 / 1e-41 ND / Lus10024934 [exp] 54 / 9e-09 ND / Lus10025503 [exp] 53 / 3e-08 ND / Lus10026716 [exp] 44 / 3e-05 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G124600 [exp] 167 / 1e-53 AT4G34700 171 / 9e-57 B22 subunit of eukaryotic mitochondrial Complex I, LYR family of Fe/S cluster biogenesis protein (.1) Potri.004G163000 [exp] 167 / 1e-53 AT4G34700 174 / 1e-57 B22 subunit of eukaryotic mitochondrial Complex I, LYR family of Fe/S cluster biogenesis protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035469 pacid=23170662 polypeptide=Lus10035469 locus=Lus10035469.g ID=Lus10035469.BGIv1.0 annot-version=v1.0 ATGAGTGTGGCGTCAACGGCGGCGTACGCTGCTCGGCGGGCAGCGCAGAAGCAACAGGTTCGGATCCTGTACCGCAGGGCTCTCAAGGATACTCTGAACT GGGCAGTTCACCGTCACCTCTTTTACGAAGATGCTGACAATCTTCGCGCGAAGTTTGAGGTGAACAAGGGAGTGGAAGATCCTGATACAATTGACAGACT CATTGCTGATGGTGAGGGTCAATATAACAAGTGGAGACATCCTGATCCTTACATTGTTCCATGGGCACCTGGTGGATCTAAGTTCACTCGAAACCCAACT CCGCCTGAAGGGCGAGATGATTGTAATTGGATATGTCCTTTGGCTGATGCAGATCCTGAGAATGGATCATTGGATGCTGCGTTCAAGATTAAGGACAGCA CCATTGCCCTACTCAACTTGGAGAACAACCACGTCTGCAAGAGATACACGGTTGGGAAAGCAACCAGTTGTTTGAGAGCCATGGATCCGACCGTCACCGA ATTTGCTCACTTGAAAGTCACGGACATTGTTGCTTCCCGAAGCGACATCCAGCTCTGTCTCTGCCACGCTAGGTTCATCTAG
AA sequence Show only first row Show all	>Lus10035469 pacid=23170662 polypeptide=Lus10035469 locus=Lus10035469.g ID=Lus10035469.BGIv1.0 annot-version=v1.0 MSVASTAAYAARRAAQKQQVRILYRRALKDTLNWAVHRHLFYEDADNLRAKFEVNKGVEDPDTIDRLIADGEGQYNKWRHPDPYIVPWAPGGSKFTRNPT PPEGRDDCNWICPLADADPENGSLDAAFKIKDSTIALLNLENNHVCKRYTVGKATSCLRAMDPTVTEFAHLKVTDIVASRSDIQLCLCHARFI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34700		CIB22, AtCIB22	B22 subunit of eukaryotic mito...		Lus10035469 [exp]	0	1
AT1G31420		FEI1	FEI 1, Leucine-rich repeat pro...		Lus10034753 [exp]	3.7	0.7964
AT3G07480			2Fe-2S ferredoxin-like superfa...		Lus10009568 [exp]	4.9	0.7713
AT5G65000			Nucleotide-sugar transporter f...		Lus10026182 [exp]	6.9	0.7563
AT5G24170			Got1/Sft2-like vescicle transp...		Lus10019023 [exp]	11.0	0.7459
AT5G13640		PDAT1, ATPDAT	PHOSPHOLIPID:DIACYLGLYCEROL AC...		Lus10037657 [exp]	12.4	0.7202
					Lus10029087 [exp]	22.0	0.7548
AT4G25950		VATG3	vacuolar ATP synthase G3 (.1)		Lus10001543 [exp]	24.3	0.7726
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10011582 [exp]	24.5	0.7433
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10016495 [exp]	26.2	0.7352
					Lus10010299 [exp]	33.9	0.7615

Compare expression of checked genes

Lus10035469 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.