Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23540 539 / 0 Mov34/MPN/PAD-1 family protein (.1.2) AT1G71230 125 / 4e-33 CSN5B, AJH2 COP9-signalosome 5B (.1) AT1G22920 120 / 1e-31 CSN5A, JAB1, AJH1 ARABIDOPSIS JAB1 HOMOLOG 1, COP9 signalosome 5A (.1.2) AT1G10600 54 / 2e-08 AMSH2 associated molecule with the SH3 domain of STAM 2 (.1.2.3) AT1G80210 49 / 2e-06 BRCC36A, AtBRCC36A BRCA1/BRCA2-containing complex 36 homolog A, Mov34/MPN/PAD-1 family protein (.1.2) AT1G48790 49 / 2e-06 AMSH1 associated molecule with the SH3 domain of STAM 1 (.1) AT3G06820 47 / 8e-06 BRCC36B, AtBRCC36B BRCA1/BRCA2-containing complex 36 homolog B, Mov34/MPN/PAD-1 family protein (.1.2) AT3G11270 45 / 2e-05 MEE34 maternal effect embryo arrest 34, Mov34/MPN/PAD-1 family protein (.1.2) AT5G05780 42 / 0.0002 RPN8A, AE3, ATHMOV34 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) AT4G16144 42 / 0.0005 AMSH3 associated molecule with the SH3 domain of STAM 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031085 [exp] 568 / 0 AT5G23540 599 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10021746 [exp] 543 / 0 AT5G23540 618 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10042663 [exp] 542 / 0 AT5G23540 616 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10012493 [exp] 184 / 3e-58 AT5G23540 219 / 2e-73 Mov34/MPN/PAD-1 family protein (.1.2) Lus10026947 [exp] 125 / 6e-33 AT1G71230 597 / 0.0 COP9-signalosome 5B (.1) Lus10011716 [exp] 114 / 3e-32 AT5G23540 115 / 1e-33 Mov34/MPN/PAD-1 family protein (.1.2) Lus10012494 [exp] 102 / 1e-27 AT5G23540 100 / 1e-27 Mov34/MPN/PAD-1 family protein (.1.2) Lus10011717 [exp] 101 / 4e-27 AT5G23540 102 / 2e-28 Mov34/MPN/PAD-1 family protein (.1.2) Lus10020149 [exp] 95 / 2e-21 AT2G07560 469 / 1e-155 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G127900 [exp] 553 / 0 AT5G23540 567 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Potri.014G032900 [exp] 550 / 0 AT5G23540 563 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Potri.006G275100 [exp] 125 / 5e-33 AT1G22920 565 / 0.0 ARABIDOPSIS JAB1 HOMOLOG 1, COP9 signalosome 5A (.1.2) Potri.018G006100 [exp] 124 / 7e-33 AT1G22920 589 / 0.0 ARABIDOPSIS JAB1 HOMOLOG 1, COP9 signalosome 5A (.1.2) Potri.010G041200 [exp] 50 / 3e-07 AT1G10600 256 / 3e-87 associated molecule with the SH3 domain of STAM 2 (.1.2.3) Potri.015G045800 [exp] 49 / 3e-06 AT1G48790 581 / 0.0 associated molecule with the SH3 domain of STAM 1 (.1) Potri.010G141100 [exp] 43 / 0.0002 AT4G16144 697 / 0.0 associated molecule with the SH3 domain of STAM 3 (.1) Potri.001G172800 [exp] 42 / 0.0005 AT1G80210 484 / 2e-170 BRCA1/BRCA2-containing complex 36 homolog A, Mov34/MPN/PAD-1 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0366 [flax] [poplar] JAB PF01398 [flax] [poplar] JAB JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Representative CDS sequence Show only first row Show all	>Lus10035470 pacid=23170594 polypeptide=Lus10035470 locus=Lus10035470.g ID=Lus10035470.BGIv1.0 annot-version=v1.0 ATGGCCGGAATCGAGAGACTCCAGAGAATGCTCGGAGGCGCCGGCGGTGGCTTCGGACACCCGCCGACAGACGGCCCAGCTGTCGACACCTCTGAGCAGG TCTATATCTCATCGCTCGCCCTTCTCAAGATGCTTAAACACGGAAGAGCTGGGGTTCCTATGGAGGTTATGGGGCTGATGCTTGGAGAGTTCGTTGACGA ATATACCGTTCGTGTTGTTGACGTATTCGCGATGCCGCAGAGTGGTACTGGCGTCAGTGTTGAAGCTGTTGACCATGTGTTCCAGACTAACATGCTAGAT ATGCTCAAGCAGACTGGGAGGCCAGAGATGGTCGTTGGTTGGTACCATTCCCATCCAGGATTTGGATGCTGGCTGTCTGGTGTGGATATTAACACGCAGC AGAGTTTTGAAGCACTAAATCAAAGGGCTGTTGCTGTTGTGGTGGATCCTATTCAAAGTGTACGAGGAAAGGTTGTGATTGATGCTTTCCGACTGATCAA CCCTCAGACAATGATGCTTGGCCAAGAACCTCGGCAAACAACTTCCAATCTTGGAAATCTCAACAAACCATCCATTCAAGCATTGATCCATGGACTGAAT AGGCATTACTACTCAATTGCCATTAACTACCGGAAGAATGAGCTTGAGGAGAAAATGCTTCTCAACTTGCACAAGAAGAAATGGACTGATGGATTGACTC TCAGGCGGTTTGATGGTCACTCTAAAACTAATGAGCAGACTGTTCAGGAGATGCTGAGCTTAGCAGTGAAGTACAACAAGGCAGTGCAAGAGGAAGACGA GCTGTCGCCGGAGAAGCTTGCGATTGCAAACGTGGGAAGGCAAGATGCTAAGAAGCACCTTGAAGAACATGTGTCTAACCTCATGTCTTCCAACATTGTC CAGACCTTGGGCACCATGCTCGACACAGTCGTCTTTTAA
AA sequence Show only first row Show all	>Lus10035470 pacid=23170594 polypeptide=Lus10035470 locus=Lus10035470.g ID=Lus10035470.BGIv1.0 annot-version=v1.0 MAGIERLQRMLGGAGGGFGHPPTDGPAVDTSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLD MLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVRGKVVIDAFRLINPQTMMLGQEPRQTTSNLGNLNKPSIQALIHGLN RHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLRRFDGHSKTNEQTVQEMLSLAVKYNKAVQEEDELSPEKLAIANVGRQDAKKHLEEHVSNLMSSNIV QTLGTMLDTVVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10035470 [exp]	0	1
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10034073 [exp]	1.0	0.9273
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10028160 [exp]	3.0	0.9027
AT2G18390		HAL, ARL2, TTN5...	TITAN 5, HALLIMASCH, ARF-LIKE ...		Lus10026383 [exp]	3.2	0.9261
AT2G27020		PAG1	20S proteasome alpha subunit G...		Lus10037416 [exp]	4.2	0.9156
AT1G52600			Peptidase S24/S26A/S26B/S26C f...		Lus10023131 [exp]	6.5	0.8932
AT2G34520		RPS14	mitochondrial ribosomal protei...		Lus10034657 [exp]	10.4	0.8904
AT3G04830			Protein prenylyltransferase su...		Lus10001785 [exp]	10.7	0.9085
AT1G26870	NAC	FEZ, ANAC009	FEZ, Arabidopsis NAC domain co...		Lus10036749 [exp]	12.0	0.9109
AT2G33640			DHHC-type zinc finger family p...		Lus10016036 [exp]	12.2	0.9136
AT5G55000		FIP2	potassium channel tetramerisat...		Lus10020270 [exp]	12.9	0.8665

Compare expression of checked genes

Lus10035470 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.