Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21300 1003 / 0 ATP binding microtubule motor family protein (.1.2) AT4G38950 959 / 0 ATP binding microtubule motor family protein (.1.2) AT3G51150 596 / 0 ATP binding microtubule motor family protein (.1.2) AT5G66310 594 / 0 ATP binding microtubule motor family protein (.1) AT4G24170 541 / 6e-178 ATP binding microtubule motor family protein (.1) AT1G18370 471 / 3e-151 HIK, ATNACK1 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) AT3G43210 454 / 2e-145 TES, ATNACK2 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) AT5G42490 368 / 2e-111 ATP binding microtubule motor family protein (.1) AT3G10180 298 / 2e-85 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G12020 275 / 1e-78 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031086 [exp] 1783 / 0 AT2G21300 1026 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10014268 [exp] 600 / 0 AT5G66310 667 / 0.0 ATP binding microtubule motor family protein (.1) Lus10025969 [exp] 599 / 0 AT3G51150 694 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10033920 [exp] 563 / 0 AT3G51150 578 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10010624 [exp] 558 / 0 AT3G51150 577 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10015448 [exp] 546 / 0 AT3G51150 558 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10032452 [exp] 466 / 2e-149 AT1G18370 1452 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) Lus10005181 [exp] 458 / 6e-147 AT3G43210 1189 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) Lus10042952 [exp] 465 / 4e-145 AT1G18370 1206 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G162800 [exp] 1215 / 0 AT2G21300 1031 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.009G124500 [exp] 1159 / 0 AT2G21300 752 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.007G014800 [exp] 845 / 0 AT5G66310 868 / 0.0 ATP binding microtubule motor family protein (.1) Potri.005G116900 [exp] 815 / 0 AT3G51150 668 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.002G027600 [exp] 758 / 0 AT2G21300 722 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.006G136600 [exp] 484 / 1e-156 AT3G43210 1250 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) Potri.012G054400 [exp] 462 / 5e-148 AT1G18370 1466 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) Potri.015G044600 [exp] 457 / 2e-146 AT1G18370 1518 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) Potri.006G040700 [exp] 295 / 3e-84 AT3G10180 1336 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G013300 [exp] 282 / 7e-82 AT1G59540 885 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain CL0023 [flax] [poplar] PF11995 [flax] [poplar] DUF3490 Domain of unknown function (DUF3490)
Representative CDS sequence Show only first row Show all	>Lus10035471 pacid=23170486 polypeptide=Lus10035471 locus=Lus10035471.g ID=Lus10035471.BGIv1.0 annot-version=v1.0 ATGGGGTCGATTGGAGGTGAAAGCATGCAGAAGTTGGAGAAGATGCAGCAGACTGTGGCGAGTGCCCGTGAAGAGAAGATACTTGTCTTGGTGAGGCTAA GGCCTTTGAGTGATAAGGAGATCTTGGGAGATGAAGTTGCTGATTGGGAATGTATTAATGGCACCACCGTGTTGTACCGGAATACACTCCGGGAAGGCTC CACATTTCCTTCTGCATATAGTTTTGATAGAGTATATCGAGGTGATTGCTCGACGAGACAAGTGTACGAAGATGGAACTAGAGAAGTAGCCCTTTCAGTT GTTAATGGCATCAATGCAAGCATCTTTGCTTATGGTCAAACAAGCAGTGGAAAAACGTACACGATGAATGGTATTACTGAGTATGCGGTAGCTGACATAT TTGACTACATAAACAGGCATGAAGAAAGAGCCTTCGTTTTGAAGTTCTCAGCAATTGAGATATACAATGAGTCTATTAGGGATCTCCTTATCGCAGATAA CACTTCACTTCGACTTTTAGATGATCCAGATAAAGGTACTGTGGTGGAGAAAGCCACTGAAGAAATACTAAAGGACTGGAATCATCTAAAGGAGCTCCTA TCATTTTGTGAAACTCAAAGACGGATTGGGGAGACGTTTTTGAACGAGAAAAGCTCTAGATCACATCAAATTCTTAGATTGACAATTGAAAGTTCGGCTC GTGAGTTTTTAGGCAAAGAAAATTCCACCACCTTATCAGCCACCGTGAATTTTGTGGATTTGGCGGGGAGTGAGCGGGCATCTCAGTCACAGTCGTCTGG GGCAAGGTTAAAGGAAGGATGCCACATTAACCGAAGTTTACTGACCCTGGGAACCGTCATTCGTAAACTAAGTAAGGGGAGGAATGGACACATCAACTAC AGAGATTCAAAACTGACGAGATTGCTGCAGCCAGCATTAGGCGGAAATGCTAGGACTGCCATCGTCTGCACATTGAGCCCTGCACGTAGCCATGTCGAGC AAACTAGAAACACACTGTTGTTTGCGTGCTGTGCAAAAGAAGTCACTACGAAAGCACAAGTCAATGTCGTCATGTCTGATAAGGCATTGGTTAAGCATTT ACAAAGAGAGTTGGCTAGATTAGAGAGCGAGTTAAGAACTCCTGCCCCAGCTTCGGCAGCTTGTGATTACCCGGCATTGCTCAGGAAGAGAGATCTTCAG ATACAAAAGATGGATAAAGAAATCAAAGACTTGACTAAGCAGCGGGATCTTGCTGAGTCTCGTATTCAGGATTTGCTGCAAATGATTCGACAAGATCAAG ATTCAAGAAGAACGAGTGAGATTAGCCAGAATCCGAACCAACAAGAAAGAGGAAGATGGGGAAATGATTGTTCAGTATCGGAATCGTACCCGCCTATTAA TGGTGGCGTAAGCAGATTATACGGAAGCCAATTTGATGGAGATAGTGAGAGCAACCATCTCCGAGACAGTCTCGATTATCATTCGGATGCCACTTCTTCA CTCATGCCAATTGGAAGGAAGAAGATCATGGGATCCGATTCTCGTCAGTGCTTTGTTGGGGATTATGCTTTCGATACAGCAGAAGATGATGATGAGTACT GCAAGGAAGTTCAGTGTATTGAAATGGGAGAGACGGTGCATAACAATGGCAATATCGAACAGAACCAAGAAGTAACAACTCCAGGAAATGTATCGGACGA AAGATTGAATCATCTGCAAAGGTCCATTGATCCTCTTGTTAGTAGTAGCCGATCTAGTGAGGGGCCATCTCCTTGGCCCCGGGCACCTGATGAGTCAAGC TCGACACTTGGCGACAGCACCCCATCTAACGGGTTTGAAAGAAAATATGCCGGCAGACCTGAAAGTGTCAGGAGAAGGTTTCCGCCAATAACTTATGATG CTGAAGCTCCAAGGCTGGTGAGAAACAATTCTCATTCGTCGATAGAGAGTGCTGCCACTGATGACTTCAGAAGTCAAGGTGTAGGAGCTGCAGATGATCA GGACATTCCAACTGTCGAAAATTTCGTTGCTGGACTGAAGGAGATGGCGAAGCAGGAGTACGAAAAGCAGCATGTTGATAATAACCCGGAGACGGATAGA ACATCCGAAGAGAAGAAAAGGACGGTCAAGGACATTGGATTGGATGCAATGCTGGGCGATGAGCTGACAATAGCTCCTGATTCGCCATTGAAGTTCGAGA GGCAGCAGAGAACAATAATCGAGCTTTGGCACACCTGCAACGTCTCATTAATTCACAGGACTTACTTCTTCCTGCTCTTTAAAGGTGACCCGTTGGATTC GATATACATGGAGGTGGAGCTTAGGAGGCTTTCCTTCCTCGAGGAAACGTTTTCTCCTGCAAGGCATGGCATTGGGAGTGGACAATCTCTTACGATGATC TCAAGCATGAAGGCGCTTCGTAGGGAGAGAGTAATGCTGAGCAAGCTAATGCAGAAGAGGCTGTCAGGAGAGGAGAGGAACAGGCTATACCGGAAGTGGG GAATTGAGCTGAACTCGAAACGGAGGAAGCAGCAGCTAGCTAACCGGTTATGGAGCAACCCCAAGGACGGGAACCATGTGATGGAGAGTGCAGCCATCGT GGCGAAGCTGGTGAGGTTTGCAGAACAAGGGCAGGCACTGAAGGGGATGTTTGGACTTAGTTTTACTCCTCCGAGCTCCAACATTAAGTCCTTGAGCTGG TCGTACAGCAAGTGA
AA sequence Show only first row Show all	>Lus10035471 pacid=23170486 polypeptide=Lus10035471 locus=Lus10035471.g ID=Lus10035471.BGIv1.0 annot-version=v1.0 MGSIGGESMQKLEKMQQTVASAREEKILVLVRLRPLSDKEILGDEVADWECINGTTVLYRNTLREGSTFPSAYSFDRVYRGDCSTRQVYEDGTREVALSV VNGINASIFAYGQTSSGKTYTMNGITEYAVADIFDYINRHEERAFVLKFSAIEIYNESIRDLLIADNTSLRLLDDPDKGTVVEKATEEILKDWNHLKELL SFCETQRRIGETFLNEKSSRSHQILRLTIESSAREFLGKENSTTLSATVNFVDLAGSERASQSQSSGARLKEGCHINRSLLTLGTVIRKLSKGRNGHINY RDSKLTRLLQPALGGNARTAIVCTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQRELARLESELRTPAPASAACDYPALLRKRDLQ IQKMDKEIKDLTKQRDLAESRIQDLLQMIRQDQDSRRTSEISQNPNQQERGRWGNDCSVSESYPPINGGVSRLYGSQFDGDSESNHLRDSLDYHSDATSS LMPIGRKKIMGSDSRQCFVGDYAFDTAEDDDEYCKEVQCIEMGETVHNNGNIEQNQEVTTPGNVSDERLNHLQRSIDPLVSSSRSSEGPSPWPRAPDESS STLGDSTPSNGFERKYAGRPESVRRRFPPITYDAEAPRLVRNNSHSSIESAATDDFRSQGVGAADDQDIPTVENFVAGLKEMAKQEYEKQHVDNNPETDR TSEEKKRTVKDIGLDAMLGDELTIAPDSPLKFERQQRTIIELWHTCNVSLIHRTYFFLLFKGDPLDSIYMEVELRRLSFLEETFSPARHGIGSGQSLTMI SSMKALRRERVMLSKLMQKRLSGEERNRLYRKWGIELNSKRRKQQLANRLWSNPKDGNHVMESAAIVAKLVRFAEQGQALKGMFGLSFTPPSSNIKSLSW SYSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21300			ATP binding microtubule motor ...		Lus10035471 [exp]	0	1
AT5G45290			RING/U-box superfamily protein...		Lus10035680 [exp]	3.6	0.9511
AT5G22400			Rho GTPase activating protein ...		Lus10022700 [exp]	6.2	0.9395
AT4G35240			Protein of unknown function (D...		Lus10016004 [exp]	7.4	0.9379
AT1G53165		ATMAP4KALPHA1 ,...	Protein kinase superfamily pro...		Lus10028163 [exp]	9.4	0.9177
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10016722 [exp]	13.0	0.8863
AT5G60720			Protein of unknown function, D...		Lus10016114 [exp]	13.4	0.9395
AT4G38050			Xanthine/uracil permease famil...		Lus10025716 [exp]	14.5	0.9139
AT5G22860			Serine carboxypeptidase S28 fa...		Lus10008358 [exp]	15.0	0.9149
AT3G14170			Plant protein of unknown funct...		Lus10013177 [exp]	16.0	0.9295
AT1G19630		CYP722A1	"cytochrome P450, family 722, ...		Lus10024272 [exp]	16.2	0.9376

Compare expression of checked genes

Lus10035471 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.