Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39010 148 / 5e-42 ATGH9B18 glycosyl hydrolase 9B18 (.1) AT4G39000 122 / 2e-32 ATGH9B17 glycosyl hydrolase 9B17 (.1) AT4G02290 118 / 9e-31 ATGH9B13 glycosyl hydrolase 9B13 (.1) AT1G23210 114 / 2e-29 ATGH9B6 glycosyl hydrolase 9B6 (.1) AT1G70710 113 / 4e-29 CEL1 ,AtGH9B1 CELLULASE 1, glycosyl hydrolase 9B1 (.1) AT1G02800 113 / 5e-29 ATCEL2 cellulase 2 (.1) AT1G22880 94 / 2e-22 ATCEL5 ,ATGH9B4 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4, ARABIDOPSIS THALIANA CELLULASE 5, cellulase 5 (.1.2) AT4G23560 92 / 3e-21 ATGH9B15 glycosyl hydrolase 9B15 (.1) AT4G09740 90 / 1e-20 ATGH9B14 glycosyl hydrolase 9B14 (.1) AT1G71380 88 / 4e-20 ATCEL3 ,ATGH9B3 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031090 [exp] 205 / 2e-64 AT4G39010 614 / 0.0 glycosyl hydrolase 9B18 (.1) Lus10018077 [exp] 174 / 2e-51 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1) Lus10042071 [exp] 173 / 4e-51 AT4G39010 717 / 0.0 glycosyl hydrolase 9B18 (.1) Lus10008208 [exp] 122 / 2e-32 AT4G02290 812 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10010307 [exp] 115 / 1e-29 AT4G02290 493 / 2e-171 glycosyl hydrolase 9B13 (.1) Lus10038223 [exp] 113 / 6e-29 AT4G02290 706 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10029071 [exp] 113 / 6e-29 AT1G70710 827 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10027205 [exp] 96 / 8e-23 AT1G70710 584 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10001666 [exp] 96 / 2e-22 AT1G02800 600 / 0.0 cellulase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G123900 [exp] 189 / 2e-57 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1) Potri.004G162200 [exp] 182 / 6e-55 AT4G39010 703 / 0.0 glycosyl hydrolase 9B18 (.1) Potri.014G126900 [exp] 122 / 2e-32 AT4G02290 799 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.002G202400 [exp] 120 / 1e-31 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.010G109200 [exp] 115 / 1e-29 AT1G70710 829 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.015G128000 [exp] 114 / 2e-29 AT1G70710 569 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.008G132700 [exp] 112 / 7e-29 AT1G70710 808 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.003G147600 [exp] 103 / 3e-26 AT1G02800 432 / 3e-150 cellulase 2 (.1) Potri.001G083200 [exp] 103 / 2e-25 AT1G02800 593 / 0.0 cellulase 2 (.1) Potri.019G069300 [exp] 98 / 1e-23 AT1G71380 762 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00759 [flax] [poplar] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Lus10035475 pacid=23170576 polypeptide=Lus10035475 locus=Lus10035475.g ID=Lus10035475.BGIv1.0 annot-version=v1.0 ATGGAATTCTACTGTACGGAAGCTAGAGCGTTGAAATCAAGCTTAAGAAGGGAAGTAATGGCTGCCATGAAATCTTCCCCTCGTAAGGAAGAAGAAGATT TGGCGTGGTTGAATGACGTCAATTCCGCCGAGGATCTCTCCGTTGATTGCTTCTTGGATTTCTCCCATGGCGGCTTGAAAGATGAACCAGAGCCAGAGAG CTATGAAGAAGAAGAAGAAGAAGAAGATGAAGAGGAAGATAAGGACTCTATTTCCGTTTCGAATTCCTCCTCCGTCAGTTTCTCCGATTCCTTTATCTCC GGCGAGCTTCCGTTTCATGTGGGTTACGCAGAGACATTGCTGAGAAATGCGGTTAGAGCTTTCCAGTTTGCGGATACCTACAGAGGAGCTTATAGTGACA ACTCCAATATCAGAGATGGAGCTTGCCCATTTTACTGCGACTTCGATCGCTATCAACATGAGTTATTGTGGGGAGCAGCGTGGTTGAGAAGGGCAACGTC GGATGAAATGTACTTGAATTACTTGCAGCAAAATGGGAAAACACTTGGAGCTGATGAGAATATTAACGAGTTTGGTTGGAATAATAAGCATGCTGGCCTC AATGTTCTCATCACCCCACTTCGCCTATCATCATTCAAGGTTAGGTCCGGTTCAAAGAAACACAAAATATGA
AA sequence Show only first row Show all	>Lus10035475 pacid=23170576 polypeptide=Lus10035475 locus=Lus10035475.g ID=Lus10035475.BGIv1.0 annot-version=v1.0 MEFYCTEARALKSSLRREVMAAMKSSPRKEEEDLAWLNDVNSAEDLSVDCFLDFSHGGLKDEPEPESYEEEEEEEDEEEDKDSISVSNSSSVSFSDSFIS GELPFHVGYAETLLRNAVRAFQFADTYRGAYSDNSNIRDGACPFYCDFDRYQHELLWGAAWLRRATSDEMYLNYLQQNGKTLGADENINEFGWNNKHAGL NVLITPLRLSSFKVRSGSKKHKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39010		ATGH9B18	glycosyl hydrolase 9B18 (.1)		Lus10035475 [exp]	0	1
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10000913 [exp]	1.0	0.8590
AT5G50280		EMB1006	embryo defective 1006, Pentatr...		Lus10018086 [exp]	3.2	0.8570
AT4G19410			Pectinacetylesterase family pr...		Lus10034762 [exp]	4.2	0.7916
AT5G36930			Disease resistance protein (TI...		Lus10007836 [exp]	5.2	0.8319
AT2G28840		XBAT31	XB3 ortholog 1 in Arabidopsis ...		Lus10040829 [exp]	8.1	0.8012
AT2G36240			pentatricopeptide (PPR) repeat...		Lus10017041 [exp]	8.1	0.8177
AT5G16690		ORC3, ATORC3	origin recognition complex sub...		Lus10034596 [exp]	9.9	0.8152
AT1G68930			pentatricopeptide (PPR) repeat...		Lus10030908 [exp]	11.0	0.8034
AT3G14470			NB-ARC domain-containing disea...		Lus10039540 [exp]	15.1	0.8011
					Lus10040408 [exp]	19.6	0.7546

Compare expression of checked genes

Lus10035475 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.