Plant FIBer expression Database

Lus10035476 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G75560 62 / 3e-12 zinc knuckle (CCHC-type) family protein (.1), zinc knuckle (CCHC-type) family protein (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G161800
[exp]
68 / 1e-14 AT1G75560 273 / 2e-92 zinc knuckle (CCHC-type) family protein (.1), zinc knuckle (CCHC-type) family protein (.2)
Potri.005G234700
[exp]
59 / 2e-11 AT1G75560 278 / 2e-94 zinc knuckle (CCHC-type) family protein (.1), zinc knuckle (CCHC-type) family protein (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0511 Retroviral_zf PF00098 zf-CCHC Zinc knuckle
Representative CDS sequence
>Lus10035476 pacid=23170652 polypeptide=Lus10035476 locus=Lus10035476.g ID=Lus10035476.BGIv1.0 annot-version=v1.0
ATGGGTAACGTGGTTGTAATGTGGACAGGGTGGAGGCAGAAGCTGTTGTGGGTTGGTGGTGTGATAGTTGTCCGAAGATCAGTTGTGGTAGTTCATATTA
AGGAGTTTGAGGATGAGTTCTGTCAGCAGGAGCCGAAGCAGGAGCCCAATGGACCGGAGCAGGAGCAGGAGCAGGAGTCCAATGGATCGCAAGATCCGCT
CAGAGCGCCTTTCTTATCGCAGTGCACCTTACAGACGCGATTCGCGACGGAGTTTCAGGGGGAGCTTACTTCAATTATGAGTGCGAGTCAAGGAAATAAC
CTATGCAAAAACTGTAAGCGGCCTGGACATTTTGCTAGGGAATGCCCAAATGTTGCCATCTGCCACAACTGTGGTCTTCCTGGGTATGTGTTCTAA
AA sequence
>Lus10035476 pacid=23170652 polypeptide=Lus10035476 locus=Lus10035476.g ID=Lus10035476.BGIv1.0 annot-version=v1.0
MGNVVVMWTGWRQKLLWVGGVIVVRRSVVVVHIKEFEDEFCQQEPKQEPNGPEQEQEQESNGSQDPLRAPFLSQCTLQTRFATEFQGELTSIMSASQGNN
LCKNCKRPGHFARECPNVAICHNCGLPGYVF

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G75560 zinc knuckle (CCHC-type) famil... Lus10035476
[exp]
0 1
AT3G21690 MATE efflux family protein (.1... Lus10027169
[exp]
11.1 0.8543
AT4G01240 S-adenosyl-L-methionine-depend... Lus10031968
[exp]
12.6 0.8404
AT4G31970 CYP82C2, JAH1 "cytochrome P450, family 82, s... Lus10025923
[exp]
13.6 0.8523
AT1G75560 zinc knuckle (CCHC-type) famil... Lus10035477
[exp]
13.9 0.8737
AT5G49690 UDP-Glycosyltransferase superf... Lus10027850
[exp]
21.6 0.8681
AT4G39220 ATRER1A Rer1 family protein (.1) Lus10002890
[exp]
27.4 0.7532
AT5G28470 Major facilitator superfamily ... Lus10042182
[exp]
29.0 0.8295
AT1G24020 MLP423 MLP-like protein 423 (.1.2) Lus10000474
[exp]
31.0 0.7913
AT4G36220 CYP84A1, FAH1, ... ferulic acid 5-hydroxylase 1 (... Lus10000326
[exp]
34.7 0.8217
AT2G33420 Protein of unknown function (D... Lus10011785
[exp]
37.9 0.8489

Lus10035476 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.