Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10550 652 / 0 Subtilase family protein (.1.2.3) AT4G10510 651 / 0 Subtilase family protein (.1) AT4G10540 649 / 0 Subtilase family protein (.1) AT1G32940 643 / 0 ATSBT3.5 Subtilase family protein (.1) AT1G32960 640 / 0 ATSBT3.3 Subtilase family protein (.1) AT4G10520 633 / 0 Subtilase family protein (.1) AT1G32950 622 / 0 Subtilase family protein (.1) AT4G10530 608 / 0 Subtilase family protein (.1) AT1G66210 606 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT4G21650 603 / 0 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031097 [exp] 816 / 0 AT4G10540 287 / 3e-88 Subtilase family protein (.1) Lus10016064 [exp] 546 / 0 AT2G04160 975 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10023048 [exp] 526 / 4e-177 AT5G59810 762 / 0.0 Subtilase family protein (.1) Lus10007083 [exp] 521 / 8e-175 AT5G45650 956 / 0.0 subtilase family protein (.1) Lus10020458 [exp] 520 / 3e-174 AT5G45650 940 / 0.0 subtilase family protein (.1) Lus10002780 [exp] 506 / 4e-169 AT5G45650 909 / 0.0 subtilase family protein (.1) Lus10019285 [exp] 497 / 9e-166 AT5G67360 1105 / 0.0 Subtilase family protein (.1) Lus10006505 [exp] 497 / 1e-165 AT2G04160 745 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10011537 [exp] 494 / 8e-165 AT5G67360 1117 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G161400 [exp] 1072 / 0 AT4G10550 659 / 0.0 Subtilase family protein (.1.2.3) Potri.001G450600 [exp] 738 / 0 AT1G32960 772 / 0.0 Subtilase family protein (.1) Potri.011G150900 [exp] 736 / 0 AT1G32960 744 / 0.0 Subtilase family protein (.1) Potri.011G151200 [exp] 722 / 0 AT1G32960 906 / 0.0 Subtilase family protein (.1) Potri.001G450401 [exp] 714 / 0 AT4G10550 938 / 0.0 Subtilase family protein (.1.2.3) Potri.001G002200 [exp] 576 / 0 AT4G26330 891 / 0.0 UNFERTILIZED EMBRYO SAC 17, Subtilisin-like serine endopeptidase family protein (.1) Potri.001G455800 [exp] 569 / 0 AT4G10550 558 / 0.0 Subtilase family protein (.1.2.3) Potri.011G146300 [exp] 551 / 0 AT4G10550 546 / 0.0 Subtilase family protein (.1.2.3) Potri.014G171600 [exp] 547 / 0 AT2G04160 986 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G165900 [exp] 528 / 1e-177 AT2G04160 882 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10035478 pacid=23170664 polypeptide=Lus10035478 locus=Lus10035478.g ID=Lus10035478.BGIv1.0 annot-version=v1.0 ATGGGGGGAACCCGGCAGGATAAAGCTGAGCTGGTTCAGGATTTCCACCATGAGCTTCTCTCCAATTTTGTTGGAAGCAAAGAAGTTGCGAAGGAGTCAA TTCTGTATAGCTACAAGCATGGCTTTTCTGGATTTGCTGCAGTTTTGACCAATTCACAAGCCAGGCTTATTGCAGATTTCCCTGGAGTTGTTGGAGTATC CAGGAATAGAATCTTCACAACTCAGACAACAAGAAGCTGGGACTTCCTCCATGTGAATCCTGAACTAGACAATGGGATTGCTTCAAGGAGTCACTCTGGA GCTGGCTCCATTGTTGGTGTCATGGACACCGGAATATGGCCAGAATCAAAAAGCTTCATGGATGATGGTATGAAAGAAGCCCCATCCCGTTGGAAAGGCA CATGCCAGGAAGGTCAAGGGTTCAACATCACTCACTGTAACAGGAAAATCATAGGTGCACGTTGGTATGTCAAAGGGTACGAAGCAGAGTTTGGGAAAAT CGACACAAGCGATGGAGTTGAGTTCTTATCTCCCAGAGATGCTGGTGGACATGGAACTCACACATCATCAACTGCAGTTGGTTCACCAGTGGCAAATGCA AGTTACATGGGGCTAGCTCAAGGAACATCCAGAGGAGGAGCTCCATCAGCTTGGCTAGCAATATACAAGGTCTGCTGGGCTACAGGTGGATGCAGCTCGG CCGATATCCTGGCTGGATTCGACGACGCAATTGCTGATGGTGTAGATGTGCTGTCTGTTTCATTGGGAACGTCTCCTCCTTCAGCTTCTTATGTGGATGA TCCATTGGCAGTTGGATCTTTCCATGCTGCCATAAATGGGATCACTGTGGTTTGTTCTGGTGGGAACTCCGGTCCTTACTCTCAGACCATCATTAACACA GCTCCGTGGGTTGTTACTGTTGCTGCAAGCTCCATTGATAGAGCTTTCCCTATTGGGATCACTCTTGGAAACAACCACACTGTTGTGGGCCAAGGTTTGT ATACAGGGAAGGACTTAGATGATTTTCACCCTATTGTTTATGGAGAAAACATTGCAGCTGCTGATTCTGATGCAGATACTGCAAGAAGCTGTGATTCAGG AAGCTTGGATGCTGCTCTAGCAAGAGGGAAAGTGCTACTGTGCTTTCAGTCCAGATCACAGAGATCAGCCACAACTGCCATAACTACAGTTCAAGATGTT GATGCAGTTGGCCTCATCTTCGCTAGGTTATTATACGCCAAGGATGTCTCGTCATGCTATGGAGTCCCTTGTGCTCAAGTTGACTTCACCGTTGGGACAT CTCTCCTCACTTACATTGCCTCAAACAGCAATCCTATGGTGAAGTTCAGCTCCACAAGGACAGCAGTTGGCCACCAGACATCTCAAGAAGTGGCACTCTT TTCGTCGCGAGGACCGAGTTCCCTCTCTCCTGCTATTCTGAAGCCTGATATTGCTGGTCCTGGAGTCAACATCCTAGCTTCTTGGTCGCCAGCTGGTGCT TTCAATGTTCCACTCGATTTCAAGATCGAGTCTGGAACTTCCATGTCATGCCCTCACATTTCTGGCATAGTGGCTCTAATCAAAGCTGTTCATCCTACTT GGAGCCCTGCTGCAATCAAGTCAGCCCTAATCACAACAGCTTCAACACAAGATGAGTATGGTCAAACAACCGTTGCAGAAGGAGCTCCCGAGAAGCTGGC TGATCCATTTGACTATGGTGGTGGACATGTTGATCCCAACAAAGCCATAGATCCTGGTTTGGTTTACGACATGGAAGCTTTGGACTACATCAGATTTCTT TGTGCCATGGGCTACAACAGCTCAGCAATCAGCCAGATGACCAGGAAGAACAACACACAAACACAGTGCCAGAAGAAATCAGTTTCTTCTGCAAGTATCC TCGAAAATCTGAACCTTCCATCCATTACAATTCCTGAGCTGAGACAGAACTTGACTGTGACAAGAGCGGTCACAAATGTTGGTCCTGTTGACTCCATCTA CATTGCAAGAATCCATCCTCCAGCTGGGGTCTATGTCATGGTCGAGCCATCGGTTCTGGTGTTCGATTCTGGCACGAAGCGAATCAAGTTCAAGGCTACA TTCTGTTCCAAGGTCATGATCCAAGGGAAGTACTCATTTGGACACTTGAGTTGGGAAAATAGTGATGATTCATCTCATGTTGTTAGGATTCCTCTAGTTG TAAGAACAGTCACTGACTATTCCTTTTCCTGA
AA sequence Show only first row Show all	>Lus10035478 pacid=23170664 polypeptide=Lus10035478 locus=Lus10035478.g ID=Lus10035478.BGIv1.0 annot-version=v1.0 MGGTRQDKAELVQDFHHELLSNFVGSKEVAKESILYSYKHGFSGFAAVLTNSQARLIADFPGVVGVSRNRIFTTQTTRSWDFLHVNPELDNGIASRSHSG AGSIVGVMDTGIWPESKSFMDDGMKEAPSRWKGTCQEGQGFNITHCNRKIIGARWYVKGYEAEFGKIDTSDGVEFLSPRDAGGHGTHTSSTAVGSPVANA SYMGLAQGTSRGGAPSAWLAIYKVCWATGGCSSADILAGFDDAIADGVDVLSVSLGTSPPSASYVDDPLAVGSFHAAINGITVVCSGGNSGPYSQTIINT APWVVTVAASSIDRAFPIGITLGNNHTVVGQGLYTGKDLDDFHPIVYGENIAAADSDADTARSCDSGSLDAALARGKVLLCFQSRSQRSATTAITTVQDV DAVGLIFARLLYAKDVSSCYGVPCAQVDFTVGTSLLTYIASNSNPMVKFSSTRTAVGHQTSQEVALFSSRGPSSLSPAILKPDIAGPGVNILASWSPAGA FNVPLDFKIESGTSMSCPHISGIVALIKAVHPTWSPAAIKSALITTASTQDEYGQTTVAEGAPEKLADPFDYGGGHVDPNKAIDPGLVYDMEALDYIRFL CAMGYNSSAISQMTRKNNTQTQCQKKSVSSASILENLNLPSITIPELRQNLTVTRAVTNVGPVDSIYIARIHPPAGVYVMVEPSVLVFDSGTKRIKFKAT FCSKVMIQGKYSFGHLSWENSDDSSHVVRIPLVVRTVTDYSFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10550			Subtilase family protein (.1.2...		Lus10035478 [exp]	0	1
AT1G77750			Ribosomal protein S13/S18 fami...		Lus10035785 [exp]	3.3	0.8568
AT1G78790			unknown protein		Lus10042782 [exp]	4.2	0.8446
AT4G36890		IRX14	irregular xylem 14, Nucleotide...		Lus10033785 [exp]	14.3	0.8370
AT4G38520			Protein phosphatase 2C family ...		Lus10024008 [exp]	14.9	0.7598
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10008668 [exp]	15.4	0.8262
AT5G58030			Transport protein particle (TR...		Lus10003350 [exp]	15.9	0.8316
AT2G36410			Family of unknown function (DU...		Lus10027724 [exp]	20.6	0.8043
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10031676 [exp]	24.5	0.8281
AT4G12230			alpha/beta-Hydrolases superfam...		Lus10032207 [exp]	32.2	0.8251
AT5G22280			unknown protein		Lus10016983 [exp]	34.7	0.7723

Compare expression of checked genes

Lus10035478 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.