Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61580 651 / 0 AtSLD1 sphingoid LCB desaturase 1, Fatty acid/sphingolipid desaturase (.1) AT2G46210 647 / 0 AtSLD2 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1) AT1G26340 67 / 4e-13 B5 #6, B5#6, ATCB5-A ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) AT5G53560 66 / 5e-13 B5#2, ATB5-A, ATCB5-E ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) AT2G32720 61 / 3e-11 B5 #4, B5#4, ATCB5-B ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) AT5G48810 61 / 4e-11 B5#3, ATB5-B, ATCB5-D ARABIDOPSIS CYTOCHROME B5 ISOFORM D, cytochrome B5 isoform D (.1) AT1G60660 57 / 6e-10 B5 #5, B5#5, ATCB5LP ARABIDOPSIS CYTOCHROME B5-LIKE PROTEIN, cytochrome B5-like protein (.1) AT2G46650 54 / 1e-08 B5 #1, B5#1, ATCB5-C ARABIDOPSIS CYTOCHROME B5 ISOFORM C, cytochrome B5 isoform C (.1) AT1G37130 56 / 3e-08 NIA2-1, CHL3, B29, NR2, NIA2, ATNR2 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) AT1G77760 55 / 1e-07 GNR1, NIA1 nitrate reductase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031102 [exp] 895 / 0 AT3G61580 659 / 0.0 sphingoid LCB desaturase 1, Fatty acid/sphingolipid desaturase (.1) Lus10036408 [exp] 654 / 0 AT2G46210 700 / 0.0 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1) Lus10041083 [exp] 575 / 0 AT2G46210 595 / 0.0 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1) Lus10000651 [exp] 65 / 1e-12 AT1G26340 194 / 7e-65 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) Lus10036973 [exp] 64 / 5e-12 AT1G26340 193 / 8e-65 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) Lus10008838 [exp] 62 / 1e-11 AT5G53560 232 / 3e-80 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Lus10022357 [exp] 62 / 3e-11 AT5G53560 231 / 2e-79 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Lus10022794 [exp] 60 / 9e-11 AT2G32720 211 / 1e-71 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10011858 [exp] 59 / 2e-10 AT2G32720 211 / 5e-72 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G228200 [exp] 711 / 0 AT2G46210 620 / 0.0 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1) Potri.002G165800 [exp] 670 / 0 AT2G46210 728 / 0.0 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1) Potri.014G091800 [exp] 656 / 0 AT2G46210 721 / 0.0 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1) Potri.010G156900 [exp] 67 / 3e-13 AT1G26340 166 / 4e-54 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) Potri.002G242500 [exp] 66 / 7e-13 AT2G32720 221 / 7e-76 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.001G314200 [exp] 60 / 9e-11 AT2G32720 199 / 3e-67 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.017G054300 [exp] 57 / 5e-10 AT2G32720 221 / 6e-76 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.015G007600 [exp] 57 / 1e-09 AT5G53560 153 / 8e-49 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Potri.012G024600 [exp] 56 / 3e-09 AT5G53560 163 / 5e-53 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Potri.002G088600 [exp] 57 / 1e-08 AT1G77760 1394 / 0.0 nitrate reductase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00173 [flax] [poplar] Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain PF00487 [flax] [poplar] FA_desaturase Fatty acid desaturase
Representative CDS sequence Show only first row Show all	>Lus10035482 pacid=23170646 polypeptide=Lus10035482 locus=Lus10035482.g ID=Lus10035482.BGIv1.0 annot-version=v1.0 ATGGCGGAGTCGAAAAAGAAGTACATTTCCCAGGAGGAGCTAGCCAAGCACAACAGCCCATCCGATTTATGGATCTCAATACAAGGCAAGATCTACAACG TCACCGATTGGACTAAATCCCACCCTGGAGGTTCTTCCCCTTTGCTCAATCTCGCTGGCCAGGACGCCTCCGATGCCTACTACGCCTTCCACCCTCCCAC CGCCTGGAAACACCTCGACGCTTTCTTCACCGGTTACCATCTCCAAGACTACACCGTCTCCGAGGTCTCCAAAGATTACAGAAGGCTCGTATCCGAATTC TCCAAGCTCGGGCTTTTCGACAAGAAAGGCCACGGCGTGCTCGTTTCTTTCCTGGTTATGGCAATGCTCTTTGCTCTCGCTCTCTACGGTATCTTCTGCA GCGACCGCGCTTTGGTTCATTTGCTCTCTGCTGTGATGTTAGGGTTTATGTGGATACAAAGTGGATGGCTTGGCCATGATTCTGGCCATTACCAGATCAT GACCAGCCGCGGGATGAACCGGTTCGCTCAGCTATTGGCTGGAAATTGCCTTGCTGGGATTAGCATTGGTTGGTGGAAATGGAACCACAACGCCCATCAC ATTGCCTGTAACAGTCTGGATTTTGACCCAGATCTACAGCACATCCCATTCTTCGCCGTCTCTTCTAAGCTCTTTACCTCAATCACCTCTTATTTCTATG ACAGGAAGCTGAGCTTCGACCCTGCTGCTAGGTTCCTGGTGAGTTACCAACACCTGACGTTTTACCCTGTCATGTGCCTTGCCAGGATTAATCTCTTTGC TCAGTCTTTCCTACTGCTGCTGTCCAAAAGAAGGGTTCCCAACAGGGCTCAAGAACTTGCAGGGTTAGTTGTGTTCTGGGTTTGGTACCCTTTGCTAGTA TCTTGCTTGCCCAATTGGTGGGAGAGGGTGATGTTTGTGGTGGTTAGCTTCTCGGTTACTGGGGTTCAGCACGTTCAATTCTGTCTCAACCATTTCTCCT CCAGTGTCTATGTTGGCCCTCCTAGCGGGAACGATTGGTTCGAGAAGCAAACGAAGGGGACCCTCGACATTTCTTGCTCTTCTTGGATGGACTGGTTCCA TGGTGGACTGCAGTTTCAGGTTGAGCACCATCTGTTCCCTCGTCTGCCGAGATGTCAGCTTCGTAAAGTTTCGCCCTTCGTTCAGGAGCTTTGCAAGAAG CACAACTTGCCGTACAACATTGTCTCCTTCTGGATGGCAAATGTATTGACTTGCAACATACTCAGGACTGTGGCATTGCAAGCTAGGGACATTGGTAACC CGGTTCCGAAGAATTTGGTGTGGGAAGCCATTAATACCCATGGTTGA
AA sequence Show only first row Show all	>Lus10035482 pacid=23170646 polypeptide=Lus10035482 locus=Lus10035482.g ID=Lus10035482.BGIv1.0 annot-version=v1.0 MAESKKKYISQEELAKHNSPSDLWISIQGKIYNVTDWTKSHPGGSSPLLNLAGQDASDAYYAFHPPTAWKHLDAFFTGYHLQDYTVSEVSKDYRRLVSEF SKLGLFDKKGHGVLVSFLVMAMLFALALYGIFCSDRALVHLLSAVMLGFMWIQSGWLGHDSGHYQIMTSRGMNRFAQLLAGNCLAGISIGWWKWNHNAHH IACNSLDFDPDLQHIPFFAVSSKLFTSITSYFYDRKLSFDPAARFLVSYQHLTFYPVMCLARINLFAQSFLLLLSKRRVPNRAQELAGLVVFWVWYPLLV SCLPNWWERVMFVVVSFSVTGVQHVQFCLNHFSSSVYVGPPSGNDWFEKQTKGTLDISCSSWMDWFHGGLQFQVEHHLFPRLPRCQLRKVSPFVQELCKK HNLPYNIVSFWMANVLTCNILRTVALQARDIGNPVPKNLVWEAINTHG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61580		AtSLD1	sphingoid LCB desaturase 1, Fa...		Lus10035482 [exp]	0	1
AT3G61580		AtSLD1	sphingoid LCB desaturase 1, Fa...		Lus10031102 [exp]	1.0	0.9251
AT3G46200		ATNUDT9	nudix hydrolase homolog 9 (.1)		Lus10005433 [exp]	2.2	0.8923
AT4G34980		SLP2	subtilisin-like serine proteas...		Lus10034496 [exp]	3.0	0.9004
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10007386 [exp]	3.5	0.9031
AT3G10910			RING/U-box superfamily protein...		Lus10022743 [exp]	4.4	0.8585
AT5G66330			Leucine-rich repeat (LRR) fami...		Lus10028359 [exp]	6.9	0.8737
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10031354 [exp]	7.5	0.8932
AT2G27810		ATNAT12	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Lus10009401 [exp]	8.4	0.8631
					Lus10029272 [exp]	8.5	0.8592
AT5G38300			unknown protein		Lus10033566 [exp]	9.0	0.8497

Compare expression of checked genes

Lus10035482 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.