Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45960 520 / 0 PIP1;2, ATHH2, TMP-A, PIP1B TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) AT4G00430 518 / 0 PIP1;4, TMP-C, PIP1E TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) AT1G01620 495 / 4e-179 TMP-B, PIP1C, PIP1;3 PLASMA MEMBRANE INTRINSIC PROTEIN 1;3, plasma membrane intrinsic protein 1C (.1.2) AT3G61430 490 / 2e-177 ATPIP1, PIP1;1, PIP1A PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2) AT4G23400 482 / 5e-174 PIP1D, PIP1;5 plasma membrane intrinsic protein 1;5 (.1) AT4G35100 386 / 2e-136 SIMIP, PIP3A, PIP2;7, PIP3 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) AT2G16850 384 / 2e-135 PIP3B, PIP2;8 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) AT2G37170 381 / 4e-134 PIP2;2, PIP2B PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) AT3G54820 380 / 5e-134 PIP2D, PIP2;5 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) AT2G37180 380 / 1e-133 PIP2C, PIP2;3, RD28 RESPONSIVE TO DESICCATION 28, PLASMA MEMBRANE INTRINSIC PROTEIN 2C, PLASMA MEMBRANE INTRINSIC PROTEIN 2;3, Aquaporin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032283 [exp] 530 / 0 AT2G45960 526 / 0.0 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Lus10024651 [exp] 530 / 0 AT2G45960 526 / 0.0 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Lus10028273 [exp] 518 / 0 AT4G00430 511 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Lus10014840 [exp] 454 / 7e-163 AT2G45960 461 / 1e-165 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Lus10014978 [exp] 382 / 1e-134 AT2G16850 514 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10023184 [exp] 382 / 1e-134 AT2G37170 490 / 3e-177 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Lus10019934 [exp] 382 / 2e-134 AT2G37170 474 / 6e-171 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Lus10023515 [exp] 381 / 5e-134 AT3G54820 482 / 5e-174 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) Lus10039222 [exp] 377 / 1e-132 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G128600 [exp] 527 / 0 AT4G00430 514 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.008G065600 [exp] 523 / 0 AT4G00430 514 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.010G191900 [exp] 518 / 0 AT4G00430 509 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.016G113300 [exp] 508 / 0 AT4G00430 524 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.006G098100 [exp] 484 / 4e-175 AT4G00430 482 / 4e-174 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.006G128200 [exp] 391 / 3e-138 AT2G37170 490 / 3e-177 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.010G222700 [exp] 390 / 5e-138 AT3G54820 484 / 6e-175 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) Potri.004G176300 [exp] 389 / 2e-137 AT4G35100 513 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) Potri.006G128000 [exp] 389 / 3e-137 AT2G37170 487 / 5e-176 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.009G013900 [exp] 387 / 2e-136 AT2G37170 458 / 8e-165 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [flax] [poplar] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Lus10035483 pacid=23170600 polypeptide=Lus10035483 locus=Lus10035483.g ID=Lus10035483.BGIv1.0 annot-version=v1.0 ATGGAAGGGAAGGAAGAAGATGTTAGGCTGGGAGCTAACAAGTTTTCAGAGAGGCAACCCATTGGAACCTCTGCTCAGAGTGACAAGGACTACAAGGAGC CACCACCAGCTCCTCTTTTCGAACCTGGCGAGCTCTCCTCATGGTCTTTCTACAGAGCCGGAATTGCTGAGTTCGTCGCTACATTCTTGTTTCTCTACAT CACTGTCCTCACCGTCATGGGCGTTTCCAAGTCCCCCTCCAAGTGCTCCTCTGTGGGCATTCAGGGGATTGCTTGGGCTTTTGGTGGGATGATCTTCGCC CTTGTTTACTGCACTGCTGGTATCTCAGGTGGACACATCAACCCAGCAGTGACATTTGGGCTTTTCTTGGCGAGGAAGCTGTCCTTGACGAGGGCTGTGT TCTACATGGTGATGCAGGTGCTTGGAGCCATCTGTGGAGCTGGTGTGGTCAAGGGTTTCGAAGGATCCCAAACTTTTGAGCTTAAGGGTGGTGGTGCCAA CGTTGTGGCAGGTGGATACACCAAGGGTAGTGGTCTTGGTGCTGAGATCATCGGTACCTTTGTCCTTGTCTACACTGTGTTCTCAGCTACTGATGCCAAG AGAAGCGCCAGAGACTCTCACGTTCCTATCTTGGCACCTCTCCCCATTGGGTTCGCAGTGTTCTTGGTGCACTTGGCCACCATTCCCATCACCGGAACTG GCATTAACCCGGCTAGGAGTCTGGGAGCAGCAATCATCTTCAACAAGGAAAACGCATGGGATGACCATTGGATATTTTGGGTCGGACCATTCATTGGAGC TTTTCTGGCTGCCGTGTACCACCAGGTTGTCATTAGAGCCATTCCTTTCACAAGAAGGTCTTAG
AA sequence Show only first row Show all	>Lus10035483 pacid=23170600 polypeptide=Lus10035483 locus=Lus10035483.g ID=Lus10035483.BGIv1.0 annot-version=v1.0 MEGKEEDVRLGANKFSERQPIGTSAQSDKDYKEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSPSKCSSVGIQGIAWAFGGMIFA LVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMVMQVLGAICGAGVVKGFEGSQTFELKGGGANVVAGGYTKGSGLGAEIIGTFVLVYTVFSATDAK RSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKENAWDDHWIFWVGPFIGAFLAAVYHQVVIRAIPFTRRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45960		PIP1;2, ATHH2, ...	TRANSMEMBRANE PROTEIN A, NAMED...		Lus10035483 [exp]	0	1
AT5G17190			unknown protein		Lus10034347 [exp]	2.4	0.8176
AT5G65670	AUX_IAA	IAA9	indole-3-acetic acid inducible...		Lus10011583 [exp]	2.6	0.8131
AT1G64690		BLT	BRANCHLESS TRICHOMES, branchle...		Lus10017339 [exp]	6.0	0.8005
AT2G45960		PIP1;2, ATHH2, ...	TRANSMEMBRANE PROTEIN A, NAMED...		Lus10032283 [exp]	6.3	0.8511
AT2G45960		PIP1;2, ATHH2, ...	TRANSMEMBRANE PROTEIN A, NAMED...		Lus10024651 [exp]	9.3	0.8297
AT3G16240		DELTA-TIP1, ATT...	delta tonoplast integral prote...		Lus10038293 [exp]	10.7	0.7859
AT2G13690			PRLI-interacting factor, putat...		Lus10020892 [exp]	12.2	0.8000
AT3G61260			Remorin family protein (.1)		Lus10018840 [exp]	14.9	0.7915
AT3G05520			Subunits of heterodimeric acti...		Lus10029890 [exp]	15.5	0.8110
AT5G44670			Domain of unknown function (DU...		Lus10024731 [exp]	16.7	0.7729

Compare expression of checked genes

Lus10035483 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.