Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63690 351 / 4e-117 ATSPPL2 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) AT1G01650 317 / 9e-106 ATSPPL4 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) AT2G43070 206 / 3e-61 ATSPPL3 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) AT1G05820 197 / 3e-58 ATSPPL5 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 5, SIGNAL PEPTIDE PEPTIDASE-LIKE 5 (.1.2) AT4G33410 42 / 0.0004 ATSPPL1 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017796 [exp] 322 / 2e-105 AT1G01650 802 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Lus10024653 [exp] 317 / 7e-104 AT1G63690 744 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10032285 [exp] 320 / 1e-102 AT1G63690 713 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10018834 [exp] 298 / 6e-97 AT1G01650 685 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Lus10036364 [exp] 285 / 2e-92 AT1G01650 608 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Lus10014769 [exp] 278 / 3e-85 AT4G00370 662 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1) Lus10001154 [exp] 196 / 1e-57 AT1G05820 563 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 5, SIGNAL PEPTIDE PEPTIDASE-LIKE 5 (.1.2) Lus10019557 [exp] 72 / 6e-14 AT2G43070 245 / 2e-77 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) Lus10031104 [exp] 0 / 1 AT1G63690 872 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G128500 [exp] 356 / 4e-119 AT1G63690 857 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Potri.001G103100 [exp] 351 / 3e-117 AT1G63690 829 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Potri.002G160500 [exp] 328 / 4e-108 AT1G01650 838 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Potri.014G085300 [exp] 327 / 1e-107 AT1G01650 810 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Potri.002G232200 [exp] 208 / 5e-62 AT2G43070 626 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) Potri.014G150000 [exp] 203 / 2e-60 AT2G43070 570 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) Potri.012G142400 [exp] 42 / 0.0008 AT4G33410 633 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0130 [flax] [poplar] Peptidase_AD PF04258 [flax] [poplar] Peptidase_A22B Signal peptide peptidase
Representative CDS sequence Show only first row Show all	>Lus10035484 pacid=23170668 polypeptide=Lus10035484 locus=Lus10035484.g ID=Lus10035484.BGIv1.0 annot-version=v1.0 ATGGAGACAGAAGGAGACAGAAGTTTAGTGAACGAGCGAAATCCTACTCTAATTTCTACGCCTAATCACAATCTGATTATTGCTGTAATTCAACACTCTC CTCGGAGGCCATTAGTTGATATAGCTGAAGTGTTCCTATGGTTGATGGCTGTTGGAACTATCTTGTGTGCCTCCTATTGGTCAGCCTGGAGTGCCAGAGA AGCTGCTACTGAACATGACAAGCTATTGAAGGATGCTGCCGAAGGAGTTCCCAACACAAGATCTGGTCTCAGTAGTGTTGTAAACATTAGTACAACCTCT GTCGTTCTGTTCATCGTGGTTGCTTCGTGCTTGCTAGTGTTACTTTACAAACTCATGTCTTACTGGTTCATTGAGCTTTTGGTGGTTCTTTTCTGCATAG GCGGGGTAGAGTTGTCGAGGTGGTTCAAACGCGCTGGAGAGTCGTGTATCAAAGTCCCTGTTCTAGGAGCAGTCTCATACCTCACTTTGCCTGTGTCTCC ATTCTGCATTGTTTTTGCTGTTGTCTGGGCTGTTTATCGAAATTCAACTTATGGTTGGATTGGACAAGATATTCTTCTTGTCTACTTCTACGTTTGCGCT TTCTTATACGACATGTTCTGGGTGTTTGTCTCTAAGAAGCTGTTCCACGAGAGCGTCATGATCGTAGTAAGTCCCCAATTATATGCTCGAGGCGATAAGA GCGGAGAGGACGGCATCCCAATGCTGTTAAAAATACCGCGTCTCTTTGATCCTTGGGGTGGTTACAGCATTATAGGGTTTGGTGACATACTTCTACCTGG GTTACTTGTAGGATTGGCTGGTGAACAAGACTCTTCGAGCTGGATACTTCTTGTACTCCATGCTTGCTTATGGTTTAGGCCTTCTGGTAACATACATCGC ACTAAACTTGATGGACGGGCATGGCCAGCCGGCTCTGCTCTACATTGTTCCTTCACCCTTGTTAAGGCACTCAATATCCCAGAAACAGCGGAACATGCAA AAAAAAAGGAAACCTTTCTGCCATTTTTCACCTGCAAATTGGTTCATTGCAGGAACATTTTTGGCACTGGGGAAGAAGAGGGGCGATCTTCCCATCCTGT GGACACAAGGACTGAGGTCTTGCCCTCACGTTCATCTCCAGCAAAGCGAAGAAGCTGA
AA sequence Show only first row Show all	>Lus10035484 pacid=23170668 polypeptide=Lus10035484 locus=Lus10035484.g ID=Lus10035484.BGIv1.0 annot-version=v1.0 METEGDRSLVNERNPTLISTPNHNLIIAVIQHSPRRPLVDIAEVFLWLMAVGTILCASYWSAWSAREAATEHDKLLKDAAEGVPNTRSGLSSVVNISTTS VVLFIVVASCLLVLLYKLMSYWFIELLVVLFCIGGVELSRWFKRAGESCIKVPVLGAVSYLTLPVSPFCIVFAVVWAVYRNSTYGWIGQDILLVYFYVCA FLYDMFWVFVSKKLFHESVMIVVSPQLYARGDKSGEDGIPMLLKIPRLFDPWGGYSIIGFGDILLPGLLVGLAGEQDSSSWILLVLHACLWFRPSGNIHR TKLDGRAWPAGSALHCSFTLVKALNIPETAEHAKKKETFLPFFTCKLVHCRNIFGTGEEEGRSSHPVDTRTEVLPSRSSPAKRRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10035484 [exp]	0	1
AT4G24690		AtNBR1	Arabidopsis thaliana next to B...		Lus10019471 [exp]	3.5	0.7358
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10019213 [exp]	7.4	0.7565
					Lus10020623 [exp]	7.5	0.7089
AT2G30690			Protein of unknown function, D...		Lus10014743 [exp]	7.5	0.7348
AT2G34400			Pentatricopeptide repeat (PPR-...		Lus10010320 [exp]	11.2	0.7321
AT5G15070			Phosphoglycerate mutase-like f...		Lus10005263 [exp]	11.9	0.7377
AT5G24310		ABIL3	ABL interactor-like protein 3 ...		Lus10023052 [exp]	14.1	0.6748
AT3G04240		SEC	secret agent, Tetratricopeptid...		Lus10003112 [exp]	17.7	0.6871
AT5G25820			Exostosin family protein (.1)		Lus10014424 [exp]	22.3	0.7232
AT5G15280			Pentatricopeptide repeat (PPR)...		Lus10015373 [exp]	24.9	0.6747

Compare expression of checked genes

Lus10035484 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.