Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002011 [exp] 713 / 0 ND / Lus10024633 [exp] 54 / 1e-07 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G103200 [exp] 113 / 6e-27 ND / Potri.003G128400 [exp] 105 / 3e-24 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035486 pacid=23170663 polypeptide=Lus10035486 locus=Lus10035486.g ID=Lus10035486.BGIv1.0 annot-version=v1.0 ATGAAAAGGGTGGCTGCTGCTAAGAGAGCTAACCAGAGGAAGAGTAACGCTTCAAATGCTGCTTCTGAGCATGTCTCGCTAAACGAGCTGAAGAGTTACA TGAGCTCTCTGTTGGATGAAATGAAGGACACGAGAGGGAACCTGCTGACCTGGTTGAAGGAGGAGCTGAAGAAAACCATAGCAGAAGAGGTCGCGTCGGA GCTGCAAAGGAGACAACTCAGCTTCCAAGTCAACAAGCAGCAAACTGGTACCGTGGAGGACACTCATGCCCTCAACACTTCCAAGAACAGGCAGGCGCAG CAAGCCACTATACAGCAGCAGCCGAATTTTGATGAAAACAATCGAGTAAGAACAAGAACTATCCAGGGGAGCATCAAACAGCAGCGGGTAAGCCCTTTCT GGTCATCCAGAAGAGATGAGAACTGTGGTGTTGAGATTCCTCAGAGGTTTGTTAATAATAATAACAAGACGCCATCTGATGATGCCTACAACTTCATCAA CCTAGAAACCGAGAATCCAAATGATGACAGCATGGCAACTCGGCCAACCATCCCAACAGAAAAGGCCACCAAACGAATGTTGCTGTCAGTGAAATCGAAT TCTCTAGTCCAAGATCAGCAACAGCAAAAGATTGTGTTGGAGATGGGAGCTCACCGTACAACTAGTGGTTTGTCCAAGAGATGTAGAGAAGACAAAAGGG TCGTCTTTGACTCTGATAATCACTGTAACGTACCTCAAGGAAAAGAAGCCATTATTTCAGTGACATCATCCACTGAAAACAAGCACAAAGCTACAAGGTC AGAATTCAGCGTGGAGCCAAGTTTCACTTGGAATCAAGCACCTCCTTCAATGTACTTAACATTGCCTAGTGTTCTGAACGGTGCTAACAGAAACCATAGG CCTGATGTTCCATCATTCACTAATGTTCAACCTAATAGATTTCCAGGGGTTGAAACAAGCCTCAACGGCGAAGGACCGCCAAATTCAGGCAGTTACCTTG GATACTTGATGAGGTTGATGGGGCATGATGATGAAAGAAGCAGCAGAAGCTTTGCTCCAAGTGGTGGTTTCAGGGACATGAGTTACTTGAGAAACAGCTA TATGACGACATCTTCAATTGCTGCAACTACTGTTGGATCTCATCAGTCGTCTGAAATGGGTAACTTCAACACGCCACCAAGGCAACTGGGATTGGAAGGT CTGTCCCGCCAAAGCAACTATGGTGTTGGCTTGAGGAATATTGGTGAGGAAGGCATGAGGTTTTCAGGGGGAAGCTACTCTTTTCCAGTGCAGCATTTTC CTAACAACTTCCATTGA
AA sequence Show only first row Show all	>Lus10035486 pacid=23170663 polypeptide=Lus10035486 locus=Lus10035486.g ID=Lus10035486.BGIv1.0 annot-version=v1.0 MKRVAAAKRANQRKSNASNAASEHVSLNELKSYMSSLLDEMKDTRGNLLTWLKEELKKTIAEEVASELQRRQLSFQVNKQQTGTVEDTHALNTSKNRQAQ QATIQQQPNFDENNRVRTRTIQGSIKQQRVSPFWSSRRDENCGVEIPQRFVNNNNKTPSDDAYNFINLETENPNDDSMATRPTIPTEKATKRMLLSVKSN SLVQDQQQQKIVLEMGAHRTTSGLSKRCREDKRVVFDSDNHCNVPQGKEAIISVTSSTENKHKATRSEFSVEPSFTWNQAPPSMYLTLPSVLNGANRNHR PDVPSFTNVQPNRFPGVETSLNGEGPPNSGSYLGYLMRLMGHDDERSSRSFAPSGGFRDMSYLRNSYMTTSSIAATTVGSHQSSEMGNFNTPPRQLGLEG LSRQSNYGVGLRNIGEEGMRFSGGSYSFPVQHFPNNFH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10035486 [exp]	0	1
AT5G63900			Acyl-CoA N-acyltransferase wit...		Lus10000368 [exp]	1.4	0.9252
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Lus10041893 [exp]	3.0	0.9186
					Lus10002011 [exp]	3.5	0.9235
AT5G62360			Plant invertase/pectin methyle...		Lus10031711 [exp]	6.0	0.8662
AT5G41070		DRB5	dsRNA-binding protein 5 (.1)		Lus10035176 [exp]	6.0	0.9157
AT5G01620		TBL35	TRICHOME BIREFRINGENCE-LIKE 35...		Lus10012229 [exp]	6.3	0.8407
					Lus10024122 [exp]	8.4	0.8676
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Lus10022638 [exp]	8.4	0.8750
AT3G13000			Protein of unknown function, D...		Lus10033328 [exp]	9.4	0.8399
AT5G43990		SDG18, SUVR2	SET DOMAIN PROTEIN 18, SET-dom...		Lus10022878 [exp]	11.4	0.8159

Compare expression of checked genes

Lus10035486 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.