Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63670 86 / 6e-17 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) AT2G45900 70 / 4e-12 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) AT3G53540 60 / 6e-09 unknown protein AT4G00440 56 / 1e-07 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) AT3G61380 49 / 1e-05 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) AT4G28760 47 / 4e-05 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) AT2G20240 45 / 0.0002 Protein of unknown function (DUF3741) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002008 [exp] 1383 / 0 AT1G63670 100 / 2e-21 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10042850 [exp] 76 / 1e-13 AT2G45900 316 / 1e-94 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) Lus10028147 [exp] 72 / 8e-13 AT2G45900 224 / 4e-65 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) Lus10022843 [exp] 61 / 4e-09 AT4G28760 369 / 2e-116 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Lus10036356 [exp] 61 / 4e-09 AT4G00440 241 / 6e-68 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10011911 [exp] 57 / 5e-08 AT4G28760 535 / 9e-179 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Lus10014776 [exp] 57 / 5e-08 AT4G00440 239 / 3e-67 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10024434 [exp] 56 / 1e-07 AT3G53540 449 / 2e-144 unknown protein Lus10025296 [exp] 49 / 2e-05 AT3G53540 456 / 7e-146 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G103400 [exp] 341 / 5e-104 AT2G45900 86 / 5e-17 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) Potri.002G160000 [exp] 97 / 3e-20 AT4G00440 351 / 6e-107 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Potri.014G084600 [exp] 85 / 1e-16 AT4G00440 395 / 4e-124 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Potri.002G253600 [exp] 63 / 9e-10 AT4G28760 752 / 0.0 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.006G213700 [exp] 57 / 5e-08 AT3G53540 433 / 1e-136 unknown protein Potri.016G080200 [exp] 57 / 6e-08 AT3G53540 234 / 1e-64 unknown protein Potri.014G194600 [exp] 53 / 7e-07 AT4G28760 583 / 0.0 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12552 [flax] [poplar] DUF3741 Protein of unknown function (DUF3741)
Representative CDS sequence Show only first row Show all	>Lus10035490 pacid=23170466 polypeptide=Lus10035490 locus=Lus10035490.g ID=Lus10035490.BGIv1.0 annot-version=v1.0 ATGAGTACCAACAGTTCGTATGCAATGGAAAGGAGATCATCTCCTAGGAATTCCTTGCCGAAGAACACTATGCCAAGTAGTCCTCATCCTATGAGCCCTA TGCTGCTTAAGAGTCCCATGCCTAAAAGCCCTGCTCGTCATGACACATACAAGTCTAGATGCGCTCATTGCTTACTTGGTTTCTTCCGTTTTCGCCAAAC CCATTCCAAGAAGCTCATTTCCGACTCCAGGAATGCTAGCAGACATTATGCAGATGATGGATTATCAAGAAATAAGCTTGACTGGCTTCCAAGCGTTGAT GAAAAATGTGATTGCATCGATACTGAAGGAGATCTCAGAATTAACTCTGGCCATAAAGAGGTGCTCAAAATCAAAGGGGAAATTTTGAAATCTGATTCTA AAAGTGCTTGTAGCAGAACCAAACGCCATAAGAAGCGTAGAAGAACTCGTCGTTTACCTATATCTGGTTGTTATGATGTTGCAACTATGGGACTTGGGAA AAGAGTTCCTGAACGTTTGATGGACGACAGATCATCCAAGGAGAACAAATCCATGGTGACAGCAAACTCCGGGCCAAACCAAGATCGAAATTATCTCAAA TGTCGAAACGAGATCAATCTTCAAGTCCACATGAATGAAGCAGCTGAAGCATTTATAAACAAGAGATTGGTTGACGGGCAAGTCCTTGGCGAAGATGAAG GAAAAGTTCAATCAAAACATTTTTTGGATGCATTAGATGTTCTGAACTCTAACAGAGATTTGTTCGCAAAACTTCTGCAAGACCCCAACTCTCTACTAGT GAAACATATAGAGGACTTGAGAGACTCTCAGCAAAAGGTGTTAGGCCTGGTTAATGAGTCCCTGGAGACGATTATAGTCTTGAAGCCTGATATGAAAGGC TTGGAAGATCATGCAGATATACAACAAAATGTGAGGCCTGGTCTTTCTCCTTTTGGACAAATGAAGCGTAAGTTGATGAAGGCACTTGCGCCACACAGAA AACCTCAGCTGCCGACACAAGCTGAATGTAATGAAGGAACAAGAATGGAAATTGCTGAAACGAACTTGCTTGAGCAAACGCATCCTGCGGAGGTCCAGAG TAATGACATGAGAAATACGCTAAGAAAGTTCATGACAGATGTGAGAAAAGAATCCGTTCCAACTAGTGCGAGCAACTATAAGAGCTCGAATGTCGTCCTT TTAAGGAAGCAGAGAACAAAGACCTGGGATGGAATTTGCTCTATTGATGAGTTGGAATCCTTGCATGCAGTTGGTACTCGAGGCAAGAGAGAACTTGGCT TTGTTACTCCACAACTGAGAATTTCCCCTCATAAGAGTTCTCAAATGGCACAAGAGAACAAGTGCTTCAGTCCTCAGAGGCAAAACTTTGAGGCTTCCCC TCGATCTGATGCTAACAGAAGGTTTGAGATGCTTGAAGCCCAGCCGAGCATCTCGGATGGAATTTCTGCTGATAAAGGGTATGGAGGTGCATCTACTGGC AACTACATTCATTTACACTCCAAAGCTAATACCAGCTTTGAAGTACAAACAGATCATAGTTTTGAGGATACCAGTTATGCTAGAACAGTCCCAGAACCAG ATGGTATAGATAGTGGCGAGGTAGTTGAATGTATCGACACGCCAAAAGCATTTGATTCTTTAAGACCGGATTCTTCCATCGAAAGCCAAGCCGCCATATA CTCAGAAGCTTGTTATATGCCAAGCCCTCCACGTGGTAATAGATTTGAAGTTTTGGATAAAATGGAAGATATACCAGAACAGCCTAGTCCAGTTTCTGTC CTTGAGCAATTTTGCAATGAAGATATCACTAGTCCCATAAGCAAAAAGTCTCTTTCTGACTTTACCATCCAAACTAGTTTTGACGAAAAGTGGACAGCCA GTGTTCAGTACCAGGCCCAGGAACAGCACAGATTCATGTCTGAGAGAATCACCTCAATATTGCACGCAGCGATTTCAAGTTGGGACGAACTCCTATTTAG GTGTCATTGGTCAGATGAGTTTCTCTTAGAAAATGTACTCGACGAAGTTGATATCCGTGTGTGCGACAATATAATACTCCTCGACTACGTGAACGAAATT TTGCTGGAGGGGTACCACCATTGTTTGAAATTGTCACCCTGGCTGCTGTCATCAATGAAAACAAAGATACGGCCAGTTTCAGTAGCAGAATATGCAACCC AAGAAGTGATGAAGTGCGTCAATTGGAACCTTCTTTTGCACCCGCCTATGGAAACTCTAGAGGAGTTTGTTAAAATGGACTTGTTGAATTCGAGCACTTG GACGAGCAACAAAGGTGAAGCTGATGACATTATTAGTGATGCTGCAGAAAGCATCATACAAGACTTGATCATGGATTTGGTCCAACTTTGA
AA sequence Show only first row Show all	>Lus10035490 pacid=23170466 polypeptide=Lus10035490 locus=Lus10035490.g ID=Lus10035490.BGIv1.0 annot-version=v1.0 MSTNSSYAMERRSSPRNSLPKNTMPSSPHPMSPMLLKSPMPKSPARHDTYKSRCAHCLLGFFRFRQTHSKKLISDSRNASRHYADDGLSRNKLDWLPSVD EKCDCIDTEGDLRINSGHKEVLKIKGEILKSDSKSACSRTKRHKKRRRTRRLPISGCYDVATMGLGKRVPERLMDDRSSKENKSMVTANSGPNQDRNYLK CRNEINLQVHMNEAAEAFINKRLVDGQVLGEDEGKVQSKHFLDALDVLNSNRDLFAKLLQDPNSLLVKHIEDLRDSQQKVLGLVNESLETIIVLKPDMKG LEDHADIQQNVRPGLSPFGQMKRKLMKALAPHRKPQLPTQAECNEGTRMEIAETNLLEQTHPAEVQSNDMRNTLRKFMTDVRKESVPTSASNYKSSNVVL LRKQRTKTWDGICSIDELESLHAVGTRGKRELGFVTPQLRISPHKSSQMAQENKCFSPQRQNFEASPRSDANRRFEMLEAQPSISDGISADKGYGGASTG NYIHLHSKANTSFEVQTDHSFEDTSYARTVPEPDGIDSGEVVECIDTPKAFDSLRPDSSIESQAAIYSEACYMPSPPRGNRFEVLDKMEDIPEQPSPVSV LEQFCNEDITSPISKKSLSDFTIQTSFDEKWTASVQYQAQEQHRFMSERITSILHAAISSWDELLFRCHWSDEFLLENVLDEVDIRVCDNIILLDYVNEI LLEGYHHCLKLSPWLLSSMKTKIRPVSVAEYATQEVMKCVNWNLLLHPPMETLEEFVKMDLLNSSTWTSNKGEADDIISDAAESIIQDLIMDLVQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63670			Protein of unknown function (D...		Lus10035490 [exp]	0	1
AT5G02920			F-box/RNI-like superfamily pro...		Lus10037289 [exp]	4.2	0.8007
AT1G71110			unknown protein		Lus10035272 [exp]	6.2	0.8026
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10038382 [exp]	9.6	0.8082
AT3G01750			Ankyrin repeat family protein ...		Lus10041582 [exp]	9.7	0.7616
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10005559 [exp]	14.7	0.7969
AT3G14570		ATGSL4, ATGSL04	glucan synthase-like 4 (.1.2)		Lus10042478 [exp]	20.8	0.7772
AT2G23700			Protein of unknown function, D...		Lus10040507 [exp]	21.4	0.7815
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10013694 [exp]	23.7	0.7967
AT1G67720			Leucine-rich repeat protein ki...		Lus10037051 [exp]	24.6	0.7941
AT1G79640			Protein kinase superfamily pro...		Lus10026108 [exp]	27.4	0.7797

Compare expression of checked genes

Lus10035490 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.