Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17565 63 / 1e-10 F-box family protein with a domain of unknown function (DUF295) (.1) AT3G03730 55 / 4e-08 F-box family protein with a domain of unknown function (DUF295) (.1) AT3G25750 54 / 6e-08 F-box family protein with a domain of unknown function (DUF295) (.1) AT1G44080 54 / 1e-07 F-box family protein with a domain of unknown function (DUF295) (.1) AT2G05970 51 / 6e-07 F-box family protein with a domain of unknown function (DUF295) (.1) AT2G26160 50 / 1e-06 F-box family protein with a domain of unknown function (DUF295) (.1) AT5G55150 50 / 2e-06 Protein of unknown function (DUF295) (.1) AT1G27580 48 / 9e-06 Protein of unknown function (DUF295) (.1) AT3G03720 48 / 1e-05 CAT4 cationic amino acid transporter 4 (.1.2) AT3G22345 47 / 1e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011573 [exp] 64 / 1e-10 ND / Lus10041838 [exp] 51 / 1e-06 AT1G65770 147 / 2e-40 ascorbic acid mannose pathway regulator 1 (.1) Lus10007081 [exp] 49 / 6e-06 AT5G55150 45 / 6e-05 Protein of unknown function (DUF295) (.1) Lus10028385 [exp] 49 / 6e-06 AT1G65770 116 / 4e-29 ascorbic acid mannose pathway regulator 1 (.1) Lus10023984 [exp] 46 / 4e-05 AT2G17030 336 / 2e-112 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10025100 [exp] 46 / 4e-05 AT2G17030 335 / 4e-112 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10013995 [exp] 43 / 0.0004 AT2G17030 52 / 6e-07 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10022650 [exp] 42 / 0.0004 AT2G17030 96 / 4e-22 F-box family protein with a domain of unknown function (DUF295) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G105400 [exp] 67 / 4e-12 AT1G65770 148 / 8e-41 ascorbic acid mannose pathway regulator 1 (.1) Potri.004G134900 [exp] 64 / 4e-11 AT4G17565 99 / 8e-23 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.002G014500 [exp] 62 / 2e-10 AT2G17030 130 / 9e-34 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.005G105100 [exp] 59 / 2e-09 AT1G65770 135 / 3e-36 ascorbic acid mannose pathway regulator 1 (.1) Potri.005G105200 [exp] 57 / 1e-08 AT1G65770 132 / 4e-35 ascorbic acid mannose pathway regulator 1 (.1) Potri.004G179685 [exp] 52 / 3e-07 AT2G17030 360 / 2e-121 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.005G105000 [exp] 48 / 5e-06 AT1G65770 124 / 8e-33 ascorbic acid mannose pathway regulator 1 (.1) Potri.009G140000 [exp] 43 / 0.0003 AT2G17030 370 / 6e-126 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.001G277400 [exp] 42 / 0.0004 AT2G17030 130 / 9e-34 F-box family protein with a domain of unknown function (DUF295) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03478 [flax] [poplar] DUF295 Protein of unknown function (DUF295)
Representative CDS sequence Show only first row Show all	>Lus10035492 pacid=23170562 polypeptide=Lus10035492 locus=Lus10035492.g ID=Lus10035492.BGIv1.0 annot-version=v1.0 ATGGCGGATTGGCAAAATCTCCCTGACGAACTCCTTCGTTCATTAGCCGAGAAAGACCTCGATTTCTCCGCCAACATCCGTTTCAGCAGTGTATGCCGCT CCTGGAGACTGGTCGGTCTACAGGAACGCCGCCGCATCGTTGAGCGGCAGATTCCTGGCTTAGTTATTACTACTTTTCCACCAGAACCACAACAGCCGCC ATGCAGCAACAGCAGCCGATACTACATACCGCTAACGGAGATAATCAAGCATCATAATAAGAATGGCAGTTTCAAGATGAACCACACGACAAACCACATA CTTCTTCCATGGAGTTTGCCAGAGAGAAGCCTCTGCATCGGATCCTTCAGAGGATGTATGCTCCTTCTGGACTATAATGAGACCGATTTGGCGCTGCGGA ACCCTATCACCGGTTCGCAAGTTTCGCTTCCCAAGAATTCCAGGAAGAGCATTAATCACTTTGAGTTTCAGACTTGGGGGTTCTGGTATAACAGGAAGGT CTCAATGTGGAGTCCCCACCACTCTTTTTCTGAATGGTATGTCTTCGTGGTGTTGCCTCTGGAGAAATTCCTGACGTATTGCAGAGTCGGAGATTCTGAC TGGGGAATTGTGGACTTTACAGACTTCCAACAGGGGGAGCTGAATTATGTTGTTGATGCACTCTGCCTGGTTCGGAGTCTCTACGTTTTGCTGCGTGCGG GCGAGCTCTACTGTTGCGATTTCGACTCGGGATTCGTGGAGAAGAAGAAGGTGGCGAGTAGCTCTCAGATTGAAGCTTTCAAATCTGACAATAAACGCAA CTATCTGGTGGAATTCAACGGCCAAATCCTGCTGGTACGTCAAATCACGCCTCCACATCGCAGCTTTGATGTGTATAAACTTGACACACAACTGAACCAA TGGGTTGAGTTGAGAGATCTCGGAGACGCTGCTGTGATCGTCGGATTCGGCCAGCCATTTTCAGTTCCAGTTCCAGCGGAAGAGTCCACTGAGCTACTTG GGATCAAAAGGAACTGCATCTATTTTCTGGAAGCTGAAGAAGTAATTGAATGTGCCGCTGTCTATTTCAACATTCATGTGTTTGATTTGAAGACATCAAC AACCGACATCTATGGTATCGATCATAAATTCCAAATGCCACGTCCAGGGGAACCGGTTCGCCTGCCAATACCAATAGGGCTCCAGTGCCATGGTGAAACA TGA
AA sequence Show only first row Show all	>Lus10035492 pacid=23170562 polypeptide=Lus10035492 locus=Lus10035492.g ID=Lus10035492.BGIv1.0 annot-version=v1.0 MADWQNLPDELLRSLAEKDLDFSANIRFSSVCRSWRLVGLQERRRIVERQIPGLVITTFPPEPQQPPCSNSSRYYIPLTEIIKHHNKNGSFKMNHTTNHI LLPWSLPERSLCIGSFRGCMLLLDYNETDLALRNPITGSQVSLPKNSRKSINHFEFQTWGFWYNRKVSMWSPHHSFSEWYVFVVLPLEKFLTYCRVGDSD WGIVDFTDFQQGELNYVVDALCLVRSLYVLLRAGELYCCDFDSGFVEKKKVASSSQIEAFKSDNKRNYLVEFNGQILLVRQITPPHRSFDVYKLDTQLNQ WVELRDLGDAAVIVGFGQPFSVPVPAEESTELLGIKRNCIYFLEAEEVIECAAVYFNIHVFDLKTSTTDIYGIDHKFQMPRPGEPVRLPIPIGLQCHGET

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17565			F-box family protein with a do...		Lus10035492 [exp]	0	1
AT4G04980			unknown protein		Lus10031636 [exp]	6.1	0.8022
AT5G02070			Protein kinase family protein ...		Lus10014387 [exp]	6.3	0.8714
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10010831 [exp]	12.0	0.8684
AT2G24840	MADS	DIA, AGL61	DIANA, AGAMOUS-like 61 (.1)		Lus10030824 [exp]	13.6	0.7327
AT1G69970		CLE26	CLAVATA3/ESR-RELATED 26 (.1.2)		Lus10010735 [exp]	20.6	0.8573
AT4G10790			UBX domain-containing protein ...		Lus10027684 [exp]	22.7	0.8569
AT2G46495			RING/U-box superfamily protein...		Lus10025546 [exp]	23.1	0.8467
AT4G24450		PWD, GWD3, ATGW...	"phosphoglucan, water dikinase...		Lus10032829 [exp]	26.0	0.8422
AT3G45070			P-loop containing nucleoside t...		Lus10003070 [exp]	27.8	0.8491
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10016860 [exp]	28.6	0.8372

Compare expression of checked genes

Lus10035492 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.